Methylobacterium sp. DM1: C0214_00040
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Entry
C0214_00040 CDS
T05461
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
metd
Methylobacterium sp. DM1
Pathway
metd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
metd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C0214_00040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
metd03400
]
C0214_00040
Enzymes [BR:
metd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C0214_00040
DNA repair and recombination proteins [BR:
metd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C0214_00040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
NAT10_TcmA_helicase
nSTAND3
AAA_29
HHH_2
AAA_22
DEAD
AAA_16
UvrD-helicase
PIF1
MeaB
NTPase_1
TrwB_AAD_bind
RsgA_GTPase
IstB_IS21
AAA
T2SSE
HerA_C
AAA_28
CbiA
HHH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AWI86900
LinkDB
All DBs
Position
7943..10126
Genome browser
AA seq
727 aa
AA seq
DB search
MNAPVRPPDLDLLAGSVERVTFHSAETGFCVLKVHARGKRDLVPVVGHAPAIAAGEWLTA
SGRWVTDREHGLQFRADTLQVTPPTGIEGIERYLASGQMRGIGPMMAKRIVAAFGEAVFE
IIEAEPGRLTEVEGIGRKRAGRIVKGWAEQKAVREIMIFLHAHGVGTARATRIFRTYGGD
SLKVMAEDPYRLARDIRGIGFRTADAIALRLGLAREAPQRLAAGVSYALQTAMDEGHCGL
PVERLVGLAADLLDVAPDLVRVAAALALREGREVVADTLRGEPCLFLKGLHGAERAIAMR
LAERAAGAPPWPPIDLAMARPWVEAKTAKTLSASQAEAVELVLRSKLCVLTGGPGVGKTS
TLDAILRILTAKGVRVLLAAPTGRAAKRMAEQTGLEARTLHRLLEIDPRNGGFQRTEDNP
LDCDLLVVDETSMVDVPLVNAVLKAVPDHAGLILVGDVDQLPSVGPGQILADVIASGRVP
VARLTEIFRQAAESRIVVNAHSINTGRMPVTAPKGEASDFYLVEIEDADQGVETLVEIVT
RRIPQRFGLDPARDIQVLTPMIRGSLGSRNLNHALQRVLNPSPPAQVERFGWRFAPGDRV
METRNDYDRDVFNGDLGTVSAIDSEEEALVVDFEGRPVIYPFCELDTLVPAFATTIHKAQ
GSEYPAVVIPVVTQHRTMLARNLLYTGVTRGRRLVVLVGQRRAIGMAIREAASRRRWTKL
REWLEAG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgccggtccggccgcccgatctcgacctgctcgccggctcggtcgagcgggtg
acgttccatagcgccgagaccggcttctgcgtcctcaaggtccatgcgcggggcaagcgc
gacctcgtgccggtggtgggccacgcccccgcgatcgccgcgggcgagtggctgacggcc
tcggggcgctgggtcaccgaccgcgagcacggcctccagttccgtgccgacacgctccag
gtgacgccgccgacggggatcgagggcatcgagcgctatctcgcctccggccagatgcgc
ggcatcggcccgatgatggccaagcgcatcgtcgccgccttcggcgaggcggttttcgag
atcatcgaggcggagcccggccgcctcaccgaggtcgaggggatcggccgcaagcgcgcc
ggtcgtatcgtaaaaggctgggccgagcagaaggccgtgcgggagatcatgatctttctg
cacgcacacggcgtcggtacggcgcgggcgactcggatcttccgcacctatggcggggac
tcgctgaaggtgatggcggaggatccctatcgcctcgcccgcgacatccggggcatcggc
ttccgcacggcggacgcgatcgcgttgcgcctcggcctcgcccgcgaggcgccccagcgg
ctcgccgccggcgtgtcgtacgcgctccagacggcaatggacgagggccattgcggccta
cccgtcgagcggctggtgggcctcgccgccgatctcctcgacgtcgcgcccgatctcgtc
cgcgttgccgcggcgttggcgctgcgcgagggtcgcgaggttgtggccgatacgctgcgc
ggcgagccctgcctgtttctcaagggcctgcacggagccgagcgcgccatcgcgatgcgc
ctcgccgagcgcgccgccggcgccccgccctggccgccgatcgacctcgcgatggctcgc
ccctgggtcgaggcgaagaccgccaagacgctctccgcctcgcaggccgaggcggtcgag
ctggtgctgcgctccaagctctgcgtgctcaccggtggccccggtgtcggcaagaccagc
accctcgacgcaatcctgcgcatccttacggccaagggcgtacgggtactgctcgccgcc
ccgaccggccgcgcggccaagcgcatggccgagcagacggggctggaggcccgcaccctt
caccgcctactggagatcgacccgcgcaacggcggctttcaacggaccgaggacaatccc
ctcgattgcgacctcctcgttgtcgacgaaacctcgatggtcgacgtgccgctggtgaac
gccgtactcaaggcggtgccggaccatgccggcctgatcctcgtcggcgatgtcgatcaa
ttgccgtccgtcggccccggccagattctcgccgacgtgatcgcctcgggccgggtgccc
gtggcccgcctcaccgagatctttcgccaagcggcggagagccggatcgtcgtcaacgcc
cacagcatcaacaccggccggatgccggtcacggcgcccaaaggcgaggcgagcgacttc
tacctcgtcgagatcgaggatgcggatcagggcgtcgagacactggtggaaatcgtgacc
cggcgcatcccgcagcgcttcggcctcgatccagcccgcgacatccaggttctgacgccg
atgatccgcggctcgctcggcagccgcaacctcaatcacgcccttcagcgcgtgctgaac
ccctcgccgccggcgcaggtcgagcgcttcggctggcgcttcgcccccggcgaccgggtg
atggagacccgcaacgactacgaccgcgacgtgttcaacggcgatctcggcacggtcagc
gccatcgattccgaggaggaggcactcgtggtcgatttcgaggggcgcccggtgatctat
cccttctgtgaactcgacacgctcgtgccggccttcgccaccacgatccacaaggcgcaa
ggctcggaatacccggcggtggtaatcccggtggttacgcagcaccgcaccatgctcgcg
cgcaacctgctctataccggtgtcacccgtgggcgccgcctcgtggtgctggtcggccag
cgccgggcgatcggcatggcgatccgcgaggcggcctcgcggcggcgctggaccaagctg
cgggaatggctcgaagcgggctga
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