Methylobacterium sp. DM1: C0214_14570
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Entry
C0214_14570 CDS
T05461
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
metd
Methylobacterium sp. DM1
Pathway
metd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0214_14570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metd03019
]
C0214_14570
Enzymes [BR:
metd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C0214_14570
Messenger RNA biogenesis [BR:
metd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0214_14570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWI89371
LinkDB
All DBs
Position
complement(3079009..3080541)
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AA seq
510 aa
AA seq
DB search
MTQFTDFGLAQPVLRALEEAGYVTPTPIQSQAVPPAMEGRDLCGIAQTGTGKTAAFALPI
LHRLSLENRRAPRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNISRQER
AIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAR
RQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVL
RDPKIERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVLV
ATDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI
ERTTRQKVPVAGFPEGFVPPSRQEAQDTAAEEARRPPRQPQGRPGHRQGRPGGGRGQGGE
GRGEPRAHEARGGRPGGQPGHRQDQRSGAPRPDGQRQDQRRPDRAGEGRPQGARPQGARP
QGGRPNDGRPARSGSEGGRAIGWLDRAPRS
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaattcactgatttcggcctcgctcagcccgtgctccgcgcgctggaagaggcc
ggctacgtcacgccgaccccgatccagtcgcaggcggttccgccggcgatggaaggccgc
gacctctgcggcatcgcccagaccggcaccggcaagaccgccgccttcgccctgccgatc
ctccaccgcctgtcgctcgagaaccgccgcgcgccgcgccgcggttgccgcgtgctcgtg
ctctcgccgacccgcgagctggcgagccagatcgccgagagcttctccgattacggccgg
cacctgccctacaccaacaccgtcgtgttcggcggcgtgaacatcagccgtcaggagcgg
gcgatcgcgccgggcgtcgatatcctcgtcgccacgccgggccggctcatcgacctcgtc
gatcgccgggcgctgacgctggagggcgtcgagatcctcgtcctcgacgaggccgaccag
atgcttgacctcggcttcatccacgcgctcaagcggatcgtgaagatgctgccggcgcgc
cgccagagcctgttcttctcggccacgatgccgaagaacatcgccggcctcgccgaccag
tacctgtccaacccggtgcaggtggcggtcacacccgtggcgacgaccgccgagcgggtg
gatcagcaggtcatcttctgccacaccggcgcgaagcaggctctgctcaaccacgtcctg
cgcgatccgaagatcgagcgcgtgctcgtcttcacccgcaccaagcacggcgcggatcgg
gtcgtgcgcggcctcgacaaggccggcatcgtcggcgccgccatccacggcaacaagagc
cagccgcagcgtgagcgggcgctcgccgccttccgcgacggctcctgccgtgtgctggtc
gccaccgacatcgccgcccgcggcatcgacgtcgagggtgtcacccacgtcgtgaactac
gacttgccgaacgtgccggagagctacgtccaccgcatcggccgcacggctcgtgccgga
gcggaaggtcaggcgatctcgttctgcaacgacgaggagcgcgcctacctccgtgacatc
gagcgcaccacgcgccagaaggtgccggtcgccggcttccccgagggcttcgtgccgccg
agccgccaggaggcgcaggacaccgccgccgaggaggcacgccgtccgccgcgccagccg
cagggtcgtcccggccatcgccagggtcgtccgggcggcggtcgcggccagggtggcgag
ggccgcggcgagccgcgcgcccacgaggcgcgcggcggccgtcccggtggtcagccgggc
caccgtcaggaccagcgctccggcgccccgcgtcccgacggtcagcggcaggatcagcgc
cgccccgatcgtgccggcgagggtcgtccgcagggggcccgcccgcaaggcgcgcggccc
cagggtggtcgtccgaacgatggtcgccccgcgcgctccggcagcgagggcggtcgcgcc
atcggctggctcgaccgtgcgccgcgttcctga
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