Methylobacterium sp. DM1: C0214_19335
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Entry
C0214_19335 CDS
T05461
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
metd
Methylobacterium sp. DM1
Pathway
metd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
metd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C0214_19335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
metd03400
]
C0214_19335
DNA repair and recombination proteins [BR:
metd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C0214_19335
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C0214_19335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
DnaJ_CXXCXGXG
AAA_29
AAA_16
Anti-TRAP
RsgA_GTPase
DUF5351
Motif
Other DBs
NCBI-ProteinID:
AWI90218
LinkDB
All DBs
Position
complement(4101413..4104103)
Genome browser
AA seq
896 aa
AA seq
DB search
MDQPKPREGVRIARAGAGRPGYVTVKGAREHNLRDVDVEVPRDALVVFTGVSGSGKSSLA
FGTLYAEAQRRYFESVAPYARRMIDQVGVPDVDAIEGLPPAVALQQQRGTPSARSSVGSV
TTLSSLVRMMYSRAGTYPPGQPMLYAEDFSPNTPQGACPSCAGLGRVYQATEASMVPDPS
LTIRERAVAAWPQAWGGQNLRDILVSRGVDVDTPWKDLPRALRDWILFTDDQPQEPVYAG
LSPEQTRLARRRRLEPSYMGTFTSARRHVLGTFTNSQSALMRRRAARYLLSEDCPTCQGK
RLKPEALSVTFAGLDIGELSRMPLSELAEAMGPAAEDSLPDDHPATGDAQETLDRAAGQR
DRARRAASGASAHAGAPDVRVTPNLSIEKRLAAQRLAADLIDRIGTLTELGLGYLSLDRV
TTTLSSGELQRLRLATQLRSQLFGVAYVLDEPTAGLHPADGEAMHEALAGLLASGNSLFV
VEHDIGTMRRADWLVDVGPAAGEHGGTVLYSGPPEGLRAVEASRTRLHLFGLVEPPRRPL
REPSGWLRLEGIVRNNLHGVSAAFPLGCLTAVTGISGSGKSSLVSQALLELVGDRLGRPI
DTDDEPEDPLDDAPGAIEGRIVGGMEGVRRLVRVDQKPIGRTPRSNLATYTGLFDAVRKL
FAATPEARRRRYDAGRFSFNVAKGRCPACEGEGFVSVELLFMPSVYAPCPTCHGSRYAPE
TLEVTWNGLTIADALGLTVERACDAFADEPSVLRPLAVLRDLGLGYLRLGQPATELSGGE
AQRIKLATELQRGQRGGTLYVLDEPTTGLHPTDVDRLMLQLNGLVDAGNTVVLVEHDMRV
VAAADHVIDVGPGAGNLGGTVVAAGRPEVVAEAQASRTAPYLREELDAYEGRGSLP
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggatcagccgaagcccagagaaggggtcaggattgctcgggcaggcgcgggacggccg
ggctacgttacggtgaagggagccagggagcacaatttacgcgacgtcgacgtagaggtg
ccacgcgacgcccttgtggtgttcaccggcgtttccggctccggcaagtcctcgctcgcc
ttcggcacgctctacgcggaagcccagcggcgctacttcgaatcggtcgccccctatgcg
cggcggatgatcgatcaggtcggcgtgcccgatgtcgatgccatcgagggtcttcccccc
gccgtcgccctccagcagcagcgcggcacgcccagcgcccgctcctcggtcggcagcgtc
accactctgtcgagcctcgtgcggatgatgtactcgcgcgccggcacctacccgccgggc
cagccgatgctctacgcggaggacttctcgcccaacacgccccagggtgcctgcccgtcc
tgcgccgggcttgggcgggtctaccaagcgacggaagcatcgatggtgcccgacccttcg
ctcacgatccgcgagcgcgccgtcgcggcgtggccgcaggcctggggcggccaaaacctg
cgggacatcctcgtcagccgtggcgtcgacgtcgacacgccctggaaggatctgccgcgg
gcgctgcgggactggatcctgttcacggacgaccagccgcaggagccggtctatgccggg
ctctccccggagcagacgcggctcgcccgccggcgtcgcctggagccgagctacatgggc
acattcacgagcgcccgccgtcatgtgctcggcaccttcaccaactcgcagagcgccctc
atgcgccgccgtgccgcgcgctacctcctgagcgaggactgcccgacctgccagggcaaa
cgcctgaagcccgaggcgctctccgtcaccttcgcggggttggatatcggtgagctgtcg
cgcatgccgctctccgaactcgccgaggcgatggggccggcggccgaggacagcctgccc
gacgatcaccctgccaccggcgacgcccaagaaaccctcgaccgcgcagcgggccaacgg
gatcgcgcccggcgcgcggcctccggggcctcagcccatgcaggcgcgccggacgtgcgc
gtgacaccgaacctctccatcgaaaagcgcctcgctgcccagcgcctcgccgccgacctc
atcgaccggatcgggacgctcacggagctgggcctcggctacctgtcgctggatcgggtc
accacgaccctgtcgtcgggcgagttgcagcgcctgcgcctcgccacccagctccgctca
cagctcttcggcgtggcctacgtgctcgacgagcccaccgccgggctgcaccccgccgac
ggtgaggcgatgcacgaggcgctcgccgggctgctcgcctcgggcaattcgctgttcgtc
gtcgagcacgacatcggcacgatgcgccgggccgattggctggtcgatgtcggtccggcg
gcgggcgagcacggggggaccgtgctctatagtggcccgccggagggtttgcgcgcggtc
gaggcgtcgcgcacgcgcctccacctgttcgggttggtcgaaccgccgcggcgtccgctg
cgcgagccttcgggatggctgcggctggagggcatcgtccgcaacaacctgcacggcgtc
tcggccgcgttcccgctgggatgtctcaccgccgtgacgggcatctccggctccggcaag
tcgagcctcgtcagccaagccctgctggaactcgtcggcgaccgcctcggacggccgatc
gacaccgacgacgagccggaggatcccctcgacgacgcaccgggcgcgatcgagggccgt
atcgtcggcggcatggaaggggtccggcgtttggtccgggtcgatcagaagccgatcggg
cgcacgccccgctcgaatctcgcgacctataccggcctgttcgacgccgtccgcaagctg
ttcgccgccacgcccgaggcgcgccggcgccgctacgacgccggccgcttctccttcaac
gtcgccaagggccgctgcccggcctgcgagggcgaggggttcgtcagcgtcgaactcctg
ttcatgccgagcgtctacgccccctgcccgacctgccacgggtcccgctacgcgccggag
acgctggaggtcacgtggaacgggctgaccatcgcggacgcgctcgggctcaccgtcgag
cgcgcctgtgacgccttcgcggacgagccgtccgtgctgcgcccgctcgccgtgctgcgc
gatctcggcctgggctacctgcgcctgggccagccggcgaccgaactctccggcggcgag
gcccagcgcatcaagctcgcgaccgagctgcagcggggccagcgcggggggacgctctac
gtcctcgacgagccgacgaccgggttgcatccgaccgacgtggatcgcctcatgctccag
ctcaacggcttggtcgatgcgggcaacacggttgtcctggtcgagcacgacatgcgggtg
gtcgcagcggccgatcacgtcatcgatgtcgggcccggcgccggaaacctgggtggcact
gtggtggcggccggccgtcccgaggtggtggccgaggcgcaggcgagccgcacggcaccg
tatctgcgggaagagctcgatgcctacgaaggcaggggctcgctaccgtag
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