KEGG   Methylobacterium sp. DM1: C0214_20645
Entry
C0214_20645       CDS       T05461                                 
Name
(GenBank) ribonuclease
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
metd  Methylobacterium sp. DM1
Pathway
metd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:metd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C0214_20645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:metd03019]
    C0214_20645
   03009 Ribosome biogenesis [BR:metd03009]
    C0214_20645
Enzymes [BR:metd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     C0214_20645
Messenger RNA biogenesis [BR:metd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     C0214_20645
Ribosome biogenesis [BR:metd03009]
 Prokaryotic type
  rRNA processing factors
   C0214_20645
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AWI90426
LinkDB
Position
complement(4347671..4350871)
AA seq 1066 aa
MANNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRA
EARGARSGDTVKSQEAVSETVSEEDAIPGEGQAADAPTPEAIEAVRAALVEERPEGDEVP
AAVEPGGDASASLPEAALEPGASAGDAPSDTSAEGDVEGSAEAPAAVESSDIAAISEAPN
PPVDAEASDAVSAEAETVEPQPVAATAPVSEAEQAEAESDDDTQDSDDEDSDDEDSDDED
SEDDGSDDDEDEDDDESDDEDSDDEEEDEESEDGERRVAQVGGSGDALAEIPERPRAYRR
HYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSA
ADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSTAPA
LVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIF
ARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEA
AEEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRISPFGLLE
MSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNVVLRTRTE
TALYILNQKRAHLYDLEQRFQVAITISADDRLVATSAFQLERGEPAVKHEGPVTGVRAVA
ISPVYEAEEFEDDIVETEEAEEAEEAEITAEAETETEGAAEERSAADASEEGGGRRRRRR
RRRGGRSSGEGEARARQDNGDDNGDEAGDDNGADPEDGDEAPESEAQVAEAAVGAEAERD
ETASEAAEAGDDDGNGRRRRRGRRGGRGRGRTERNGSSDVDQDSEADEARSADASEAVSE
AHPEETASDALPVGPEEPVSDADVTTVSLAAENGSAAERPPVAPAPEVEPIRADAVAEAA
IEAAAPVPAAPEPAPEPVAVVLTPPDPNRPKRAGWWSRTKAALSGE
NT seq 3201 nt   +upstreamnt  +downstreamnt
atggccaacaacaagatgctcatcgatgcgatgcatccggaggagacccgggtcgtcaca
gttcaaggctcgcgggtcgaggaatttgatttcgaggcggccaaccgccggcctctgagg
ggcaacatctatctcgccaaggtcacccgcgtggagccctcgctccaggcggccttcgtc
gagtacggcggcaaccgccacggcttcctcgccttcaacgagatccaccccgactactac
cagatcccgatggccgaccgcctcgcgctgatcgaggccgaggcgcgcgaggaggaggag
caccgcgagcgcgaggagcgccgtcccccgcgcggccgccgctcgcgcgggcgccgggcc
gaggcccgcggcgcccgcagcggcgacacggtgaagtcgcaggaagcggtctcggagacc
gtgtccgaggaagatgcgatccccggcgagggccaggccgccgacgcgccgacgccggag
gcgatcgaggcggtgcgtgccgccctcgtcgaggagcggcccgagggcgacgaggtcccc
gcggcggtcgagcctggcggcgacgcctcggcgagtctgcccgaggccgcgctggagccc
ggcgcgtccgccggcgacgcgccgtccgacacgtctgccgaaggagatgtcgaaggatcg
gccgaggcgccggccgcggtcgagtcctccgacatcgccgcgatctccgaggcgccgaac
ccgcccgtcgacgcggaagcctccgacgccgtgtccgccgaggcggagacggtcgagccg
cagcccgtcgccgctacggcgccggtctccgaggccgagcaggccgaagcggagtccgac
gatgatacccaggactcggacgacgaggattcggacgacgaggactcggacgatgaggat
tccgaggacgacgggtccgacgatgacgaggatgaggacgacgacgagtccgatgacgag
gattcggacgacgaggaagaggacgaggagtccgaggacggcgagcgccgggtcgcgcag
gtcggcggttcgggcgacgcgctcgccgagatccccgagcgtccgcgcgcctatcgccgc
cactacaagatccaagaggtgatcaagcgccgccagatcatcctcgttcaggtcgtcaag
gaggagcgcggcaccaagggcgcggcgctcaccacctacctgtcgctcgccggccgctac
tcggtgctgatgcccaacaccggccgcggcggcggtatctcccgcaagatcacctcggcc
gccgaccgcaagcgcctgaaggaggtcgtggccgatctcgacgtgccggacgggatgggg
atcatcctgcgcacggccggcgcctcgcgcaccaagcccgagatcaagcgcgacttcgag
tacctgatgcgcctgtgggagagcgtgcgcgagctgacgctgtcctccaccgccccggcg
ctggtctacgaggagggctcgctgatcaagcgggcgatccgcgacctctacaacaaggat
ctcgacgaggttctggtctcaggcgaggacgcctaccgcgaggccaaggacttcatgcgg
atgctgatgcccggccagtcgaaggtggtgaaaccctaccgcgacccgacgccgatcttc
gcccgctacggcgtcgagcagcaactcgacgcgatgttctcgacccacgtggcgctccgc
tcgggcggctacctcgtcatcaacccgaccgaggcgctggtctcgatcgacgtgaactcg
gggcgcgccacccgcgagcacgacattgaggacaccgcgctcaagacgaacctcgaggcg
gcggaggaggtcgcccgccaggtgcgcctgcgcgatctggccggcctcgtcgtgatcgac
ttcatcgacatggaggagaagcgcaacaaccgggcggtggagaagcgcctgaacgaggcg
ctcaagaacgaccgggcccgcatccaggtcgggcggatctcgcccttcggcctcctggag
atgagccgccagcgcatccgcaccggcgtgctcgaatcctcctcgatcccctgcgcccat
tgcggcggctcgggcttcgtgcgggcgacctcctcggtggcgctgcacattctgcgctcg
atcgaggaggtgctgctcaagtcggcgagccacaacgtcgtgctgcgcacccgcaccgag
accgcgctctacatcctcaaccagaagcgggcgcatctctacgatctggagcagcgcttc
caggtggcgatcaccatctccgccgacgaccggctcgtggcgacttcggccttccagctc
gaacgcggcgagccggcggtgaagcacgagggcccggtgacgggcgtgcgcgcggtggcg
atctcgccggtctacgaggctgaggagttcgaggacgacatcgtcgagaccgaggaggcc
gaggaggccgaggaggccgagatcacggccgaagccgagaccgagacggagggcgccgcc
gaggagcgctcggctgccgacgcctccgaggagggcggcggacgccgccgccgccgccgc
cgccgccgcggcgggcgctcctccggcgagggcgaggcccgcgcgcgtcaggacaatggc
gacgacaatggggacgaggccggcgacgacaacggagccgatcccgaggacggcgacgag
gctcccgaatccgaggcgcaggtcgccgaggcggccgtcggcgccgaggctgagcgggac
gagaccgcgtcggaggctgccgaggccggcgacgacgacggcaacggacgccgccgccgc
cgcgggcgccggggcggccgcggccgcggccggaccgagcgcaacggttcctcggacgtg
gatcaggattcggaggccgacgaggcacggtcggcagacgcctccgaggccgtctccgag
gcgcatcccgaggagaccgcctctgacgcccttccggtcggccccgaggagccggtcagc
gacgccgacgtgaccaccgtctcgctcgccgccgagaacggcagcgccgcggagcggcct
ccggtcgctcccgcgccggaagtcgagccaatccgggcggatgccgtcgcggaggccgca
atcgaggcggcggcccccgtcccggcggcgccggagccggcgcccgagcccgtcgcggtg
gtgctgaccccgcccgatccgaaccgcccgaagcgggccggctggtggtcgcgcaccaag
gcagcgctgagcggggagtaa

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