Methylobacterium sp. DM1: C0214_20645
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Entry
C0214_20645 CDS
T05461
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
metd
Methylobacterium sp. DM1
Pathway
metd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0214_20645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metd03019
]
C0214_20645
03009 Ribosome biogenesis [BR:
metd03009
]
C0214_20645
Enzymes [BR:
metd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C0214_20645
Messenger RNA biogenesis [BR:
metd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C0214_20645
Ribosome biogenesis [BR:
metd03009
]
Prokaryotic type
rRNA processing factors
C0214_20645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AWI90426
LinkDB
All DBs
Position
complement(4347671..4350871)
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AA seq
1066 aa
AA seq
DB search
MANNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRA
EARGARSGDTVKSQEAVSETVSEEDAIPGEGQAADAPTPEAIEAVRAALVEERPEGDEVP
AAVEPGGDASASLPEAALEPGASAGDAPSDTSAEGDVEGSAEAPAAVESSDIAAISEAPN
PPVDAEASDAVSAEAETVEPQPVAATAPVSEAEQAEAESDDDTQDSDDEDSDDEDSDDED
SEDDGSDDDEDEDDDESDDEDSDDEEEDEESEDGERRVAQVGGSGDALAEIPERPRAYRR
HYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSA
ADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSTAPA
LVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIF
ARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEA
AEEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRISPFGLLE
MSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNVVLRTRTE
TALYILNQKRAHLYDLEQRFQVAITISADDRLVATSAFQLERGEPAVKHEGPVTGVRAVA
ISPVYEAEEFEDDIVETEEAEEAEEAEITAEAETETEGAAEERSAADASEEGGGRRRRRR
RRRGGRSSGEGEARARQDNGDDNGDEAGDDNGADPEDGDEAPESEAQVAEAAVGAEAERD
ETASEAAEAGDDDGNGRRRRRGRRGGRGRGRTERNGSSDVDQDSEADEARSADASEAVSE
AHPEETASDALPVGPEEPVSDADVTTVSLAAENGSAAERPPVAPAPEVEPIRADAVAEAA
IEAAAPVPAAPEPAPEPVAVVLTPPDPNRPKRAGWWSRTKAALSGE
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacaagatgctcatcgatgcgatgcatccggaggagacccgggtcgtcaca
gttcaaggctcgcgggtcgaggaatttgatttcgaggcggccaaccgccggcctctgagg
ggcaacatctatctcgccaaggtcacccgcgtggagccctcgctccaggcggccttcgtc
gagtacggcggcaaccgccacggcttcctcgccttcaacgagatccaccccgactactac
cagatcccgatggccgaccgcctcgcgctgatcgaggccgaggcgcgcgaggaggaggag
caccgcgagcgcgaggagcgccgtcccccgcgcggccgccgctcgcgcgggcgccgggcc
gaggcccgcggcgcccgcagcggcgacacggtgaagtcgcaggaagcggtctcggagacc
gtgtccgaggaagatgcgatccccggcgagggccaggccgccgacgcgccgacgccggag
gcgatcgaggcggtgcgtgccgccctcgtcgaggagcggcccgagggcgacgaggtcccc
gcggcggtcgagcctggcggcgacgcctcggcgagtctgcccgaggccgcgctggagccc
ggcgcgtccgccggcgacgcgccgtccgacacgtctgccgaaggagatgtcgaaggatcg
gccgaggcgccggccgcggtcgagtcctccgacatcgccgcgatctccgaggcgccgaac
ccgcccgtcgacgcggaagcctccgacgccgtgtccgccgaggcggagacggtcgagccg
cagcccgtcgccgctacggcgccggtctccgaggccgagcaggccgaagcggagtccgac
gatgatacccaggactcggacgacgaggattcggacgacgaggactcggacgatgaggat
tccgaggacgacgggtccgacgatgacgaggatgaggacgacgacgagtccgatgacgag
gattcggacgacgaggaagaggacgaggagtccgaggacggcgagcgccgggtcgcgcag
gtcggcggttcgggcgacgcgctcgccgagatccccgagcgtccgcgcgcctatcgccgc
cactacaagatccaagaggtgatcaagcgccgccagatcatcctcgttcaggtcgtcaag
gaggagcgcggcaccaagggcgcggcgctcaccacctacctgtcgctcgccggccgctac
tcggtgctgatgcccaacaccggccgcggcggcggtatctcccgcaagatcacctcggcc
gccgaccgcaagcgcctgaaggaggtcgtggccgatctcgacgtgccggacgggatgggg
atcatcctgcgcacggccggcgcctcgcgcaccaagcccgagatcaagcgcgacttcgag
tacctgatgcgcctgtgggagagcgtgcgcgagctgacgctgtcctccaccgccccggcg
ctggtctacgaggagggctcgctgatcaagcgggcgatccgcgacctctacaacaaggat
ctcgacgaggttctggtctcaggcgaggacgcctaccgcgaggccaaggacttcatgcgg
atgctgatgcccggccagtcgaaggtggtgaaaccctaccgcgacccgacgccgatcttc
gcccgctacggcgtcgagcagcaactcgacgcgatgttctcgacccacgtggcgctccgc
tcgggcggctacctcgtcatcaacccgaccgaggcgctggtctcgatcgacgtgaactcg
gggcgcgccacccgcgagcacgacattgaggacaccgcgctcaagacgaacctcgaggcg
gcggaggaggtcgcccgccaggtgcgcctgcgcgatctggccggcctcgtcgtgatcgac
ttcatcgacatggaggagaagcgcaacaaccgggcggtggagaagcgcctgaacgaggcg
ctcaagaacgaccgggcccgcatccaggtcgggcggatctcgcccttcggcctcctggag
atgagccgccagcgcatccgcaccggcgtgctcgaatcctcctcgatcccctgcgcccat
tgcggcggctcgggcttcgtgcgggcgacctcctcggtggcgctgcacattctgcgctcg
atcgaggaggtgctgctcaagtcggcgagccacaacgtcgtgctgcgcacccgcaccgag
accgcgctctacatcctcaaccagaagcgggcgcatctctacgatctggagcagcgcttc
caggtggcgatcaccatctccgccgacgaccggctcgtggcgacttcggccttccagctc
gaacgcggcgagccggcggtgaagcacgagggcccggtgacgggcgtgcgcgcggtggcg
atctcgccggtctacgaggctgaggagttcgaggacgacatcgtcgagaccgaggaggcc
gaggaggccgaggaggccgagatcacggccgaagccgagaccgagacggagggcgccgcc
gaggagcgctcggctgccgacgcctccgaggagggcggcggacgccgccgccgccgccgc
cgccgccgcggcgggcgctcctccggcgagggcgaggcccgcgcgcgtcaggacaatggc
gacgacaatggggacgaggccggcgacgacaacggagccgatcccgaggacggcgacgag
gctcccgaatccgaggcgcaggtcgccgaggcggccgtcggcgccgaggctgagcgggac
gagaccgcgtcggaggctgccgaggccggcgacgacgacggcaacggacgccgccgccgc
cgcgggcgccggggcggccgcggccgcggccggaccgagcgcaacggttcctcggacgtg
gatcaggattcggaggccgacgaggcacggtcggcagacgcctccgaggccgtctccgag
gcgcatcccgaggagaccgcctctgacgcccttccggtcggccccgaggagccggtcagc
gacgccgacgtgaccaccgtctcgctcgccgccgagaacggcagcgccgcggagcggcct
ccggtcgctcccgcgccggaagtcgagccaatccgggcggatgccgtcgcggaggccgca
atcgaggcggcggcccccgtcccggcggcgccggagccggcgcccgagcccgtcgcggtg
gtgctgaccccgcccgatccgaaccgcccgaagcgggccggctggtggtcgcgcaccaag
gcagcgctgagcggggagtaa
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