Methylobacterium sp. DM1: C0214_22005
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Entry
C0214_22005 CDS
T05461
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
metd
Methylobacterium sp. DM1
Brite
KEGG Orthology (KO) [BR:
metd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metd03016
]
C0214_22005 (thpR)
Enzymes [BR:
metd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
C0214_22005 (thpR)
Transfer RNA biogenesis [BR:
metd03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
C0214_22005 (thpR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HTH_RNase_II
2H-SAK
Insc_C
Acb1
Motif
Other DBs
NCBI-ProteinID:
AWI90659
LinkDB
All DBs
Position
4628699..4629277
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AA seq
192 aa
AA seq
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MPRLFTGLEIPPDIAERLSFFRGGLPGARWVEPSDYHITLRFLGEIDDVVAADLDAGLAE
ARARPAFTVTLDGLASFGGGRPRALYASIVPSPELTELQEEHERIARRAGAAPERRKFTP
HVTLARLNREATPEAVARTLTQAGVFPRLTFTARRAALYSARTSRGGGPYLVEAAYPFGD
GSFEPDEGADGS
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtctgttcaccgggctggagatcccgcccgacatcgccgagcggctgtcgttc
ttccgcggcggcctgcccggcgcgcgctgggtcgagccgtcggattaccacatcaccctg
cgcttcctcggcgagatcgacgacgttgtcgccgccgatctcgatgcgggtctggcggag
gcgcgggcgcgcccggccttcaccgtaaccctcgacgggctggcgagctttggcggcggc
cggcctcgcgccctctacgcctcgatcgtgccgagtccggaactgaccgagctgcaggag
gaacacgagcgcatcgcccgccgggccggcgccgcgccggagcggcgcaagttcacgccg
cacgtgacgctggcccgcctcaaccgcgaggccacgccggaggcggtggcgcgcacgctg
acccaggcgggcgtgttcccgcgcctcaccttcacggcgcggcgcgccgcgctgtactcg
gcccgcacctcgcgcggcggcggtccctacctcgtcgaggcggcctatccgttcggggac
gggtccttcgagccggacgaaggggcggacgggtcgtag
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