Methylobacterium sp. DM1: C0214_22130
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Entry
C0214_22130 CDS
T05461
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
metd
Methylobacterium sp. DM1
Pathway
metd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
metd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C0214_22130 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metd03021
]
C0214_22130 (rpoC)
03400 DNA repair and recombination proteins [BR:
metd03400
]
C0214_22130 (rpoC)
Enzymes [BR:
metd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C0214_22130 (rpoC)
Transcription machinery [BR:
metd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C0214_22130 (rpoC)
DNA repair and recombination proteins [BR:
metd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C0214_22130 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AWI90682
LinkDB
All DBs
Position
4660693..4664910
Genome browser
AA seq
1405 aa
AA seq
DB search
MNQEVMNLFNQQAQPQSFDQIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMALKDLERILYFESYVVIEPGLTPLKERQLLSEEEYLRAQEEYGEDSFTA
MIGAEAIRRILQELDLEGIATSLKEEIATTTSELKPKKLMKRLKIIEAFQLSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIVADGAVGEHKADDKNNPMQGVFG
DIGQLEHALAAKSVSLHSKIKWRWRGLGPDGEPVSRIYDTTPGRVILSGVLPLHPKVPFD
VVNKLMTKKEISAMIDTVYRHCGQKESVIFCDRIMALGFSHAFKAGISFGKDDMVVPSNK
WSIVDDTRALVKEFEQQYQDGLITQGEKYNKVVDAWGKCSTRLADEMMTQISSVQKDENG
RDKQLNSVYMMANSGARGSREQMRQLAAMRGLMSKPSGEIIETPIISNFKEGLDVLEYFN
STHGARKGLADTALKTANSGYLTRRLVDVAQDAVIREVDCGTTNGIKMRAIIDAGQVVAP
LAIRILGRAAAEDLVAQDGSVIIKSGETIEERHLPAINAAGIQEVKIRSVLVCQTKSGVC
ATCYGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQISDTSFIESSFEG
TVTIRNRSLAKNSDGDLIATGRSVAVVIIGPDGAERAVHRLQYGAKVRVDEGDTIKRGQR
IAEWDPYTRPIVAEVDGIVGYEDLYDGQSITETTDESTGIAKRVVIDWRGSSRTSDLKPA
MVVLDQDGKPVKLPRGSDARYFLPVDAIIGLDPGAKIKAGDVLARVAAESAKTRDITGGL
PRVAELFEARRPKDAAIIAEKSGSIAFGRDYKNKRRLTLTPHDGSDAVEYLIPKGKHIHL
QDGDVVELGDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVSINDKHIEVIVR
QMLQKVEITDGGDSDILTGDQIDRTELAEFNEKLLAEGKKPIQGVPVLLGITKASLQTKS
FISAASFQETTRVLTEAAVNGKVDTLEGLKENVIVGSLIPAGTGSLAADIRSIARRRDSL
ILQQRSAENAANAAELSELPPAAAE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaatcagcaggcccagccgcagagcttcgaccag
atcaagatctcgatctcgtcgccggaaaagatcctctcgtggtcctacggtgagatcaag
aagcccgagacgatcaactaccgcaccttcaagcccgagcgcgacggtctgttctgcgcg
cgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcgtatgaag
tacaagggcgtcatctgcgagaagtgcggtgtcgaggtcactctcgcacgcgttcggcgc
gaccgcatgggccatatcgagctggccgcccccgtcgcccatatctggttcctgaagtcg
ctgccgagccgcatcggcctgctgctcgacatggcgctcaaggaccttgagcggatcctg
tacttcgaatcctacgtcgtcatcgagccgggcctcacccccctgaaggagcgtcagctt
ctgtcggaggaggagtacctgcgcgcgcaggaggagtacggcgaggattcgttcacggcg
atgatcggcgccgaggcgatccggcgcatcctgcaggaactcgacctcgagggcatcgcg
acctcgctcaaggaggagatcgcgacgacgacctctgagctgaagccgaagaagctgatg
aagcgcctcaagatcatcgaggcgttccagctctcgggcaacaagcccgagtggatgatc
ctgaccgtcgtgcccgtcatcccgccggacctgcgcccgctggtcccgctggacggcggc
cgcttcgccacgtcggatctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctcaagcggctgatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcgctgttcgacaacggccgccgcggccgcgtcatcacaggt
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgttgactactcgggccgctcggtcatcgtggtcggc
cccgagctgaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaag
ccgttcatctacgcgcgcttggacgcgaaaggattttccgcgaccgtcaaacaagcaaaa
aaactcgtcgagaaggagaagccggaggtttgggacatcctcgatgaggtgatccgcgaa
cacccggtgatgctgaaccgcgcgccgacgctccaccgcctcggcatccaggccttcgag
ccgaagctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttcctctgagccttgaggctcagctg
gaggcacgcgtcctgatgatgtcgaccaacaacatcctgcacccggccaacggtcagccg
atcatcgtgccgtcgcaggacatcgttctcggcctctactacctctcgatcgtggccgac
ggcgcggtcggcgagcacaaggccgatgacaagaacaacccgatgcagggcgtgttcggc
gatatcggtcagcttgagcacgcgctcgcggccaagtccgtgtcgttgcactcgaagatc
aagtggcgctggcgcggcctcggccccgacggtgagcccgtgtcccggatctacgacacg
acgcctggccgcgtgatcctgtccggcgtgctgccgctgcacccgaaggtgcccttcgac
gtcgtcaacaagctgatgaccaagaaggaaatctcggcgatgatcgacaccgtctaccgc
cattgcggtcagaaggagtcggtgatcttctgcgaccgcatcatggcgctcggcttcagc
cacgcgttcaaggccggcatctcgttcggcaaggacgacatggtcgtgccgtcgaacaag
tggtcgatcgtcgacgacacccgcgcgctcgtgaaggagttcgagcagcagtatcaggac
ggtctgatcacgcagggcgagaagtacaacaaggtcgtcgatgcctggggcaagtgctcg
acccgcctcgcggacgagatgatgacccagatctcgtcggttcagaaggacgagaacggc
cgcgataagcagctcaactccgtctacatgatggcgaattccggcgctcgcggctcgcgt
gagcagatgcgccagctcgccgccatgcgcggcctgatgagtaagccctcgggcgagatc
atcgagacgccgatcatctcgaacttcaaggaaggtctcgacgttctcgagtacttcaac
tccacccacggcgcccgcaagggcctcgcggacacggcgctgaagaccgcgaactcgggc
tatctgacccgccgcctcgtcgacgtggcgcaggatgccgttatccgcgaggtcgattgc
ggcaccaccaacggcatcaagatgcgcgccatcatcgatgccggccaggtcgtcgccccg
ctcgccatccgcatcctgggccgcgccgcggccgaggatctggtggcgcaggacggcagc
gtcatcatcaagagcggtgagacgatcgaggagcgtcacctgccggcgatcaacgccgcc
ggcatccaggaggtgaagatccgctcggtgctggtctgccagaccaagagcggcgtctgc
gccacctgctacgggcgcgacctcgcccgcggcacgcccgtcaacatgggcgaggccgtc
ggcgtcatcgcggcgcagtcgatcggcgagccgggcacccagcttaccatgcgcaccttc
cacatcggcggtgcggcgcagatctcggacacgtccttcatcgagtcgagcttcgagggc
acggtcacgatccgtaaccggtcgctggccaagaactcggacggcgacctcatcgccacc
ggccgctcggtcgcggtggtgatcatcggtccggacggggccgagcgggcggtccaccgc
ctgcaatacggcgccaaggtgcgcgtggacgagggcgacacgatcaagcgcgggcagcgg
atcgccgagtgggatccctacacccgtccgatcgtcgccgaggtggacggcatcgtcggc
tacgaggatctctacgatggccagtccatcaccgagaccaccgacgagtcgaccggcatc
gccaagcgcgtcgtcatcgactggcgcggttcgtcgcgcacctccgacctgaagccggcg
atggtcgtcctggatcaggacggcaagccggtgaagctgccgcgcggctcggatgcccgc
tacttcctccccgtcgatgccatcatcggcctcgatccgggcgcgaagatcaaggccggc
gacgtgctggcccgcgtggcggcggaatcggccaagacccgcgacatcaccggcggtctg
ccgcgggtggcggagctgttcgaggcgcgtcgtccgaaggacgcggcgatcatcgccgag
aagtcgggctccatcgccttcggccgcgactacaagaacaagcggcgcctgacgttgacg
ccgcatgacggttccgatgcggtcgagtacctgatccccaagggcaagcacatccacttg
caggacggggacgtggtggagctcggcgactacatcgtcgacggcaacccggcgccgcac
gacatcctggcgatcaagggcgtggaggagctggccgcctacctcgtcaacgagatccag
gaggtctaccggctccagggcgtgtcgatcaacgacaagcacatcgaggtcatcgtccgg
cagatgctgcagaaggtggagatcaccgatggcggcgattccgacatcctgaccggcgac
cagatcgaccggaccgagctggccgagttcaacgagaagctgctcgccgagggcaagaag
ccgatccagggcgttccggtcctgctcggcatcaccaaggcgagcttgcagacgaagtcg
ttcatctcggcggcctcgttccaagagaccacccgcgtcctcacggaagcggcggtcaac
ggcaaggtcgacaccctggaagggctcaaggagaacgtcatcgtcggctcgctcatccca
gccggcaccggctcgctcgcggcggatatccgctccatcgcgcgccgccgcgacagcctg
atcctgcagcagcgctccgccgagaacgcggccaacgccgccgagctcagcgagctgccc
ccggccgcggccgagtag
DBGET
integrated database retrieval system
