Methanothermobacter sp. EMTCatA1: tca_00184
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Entry
tca_00184 CDS
T05328
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mete
Methanothermobacter sp. EMTCatA1
Pathway
mete03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mete00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
tca_00184 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mete03019
]
tca_00184 (cshA)
03009 Ribosome biogenesis [BR:
mete03009
]
tca_00184 (cshA)
Enzymes [BR:
mete01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
tca_00184 (cshA)
Messenger RNA biogenesis [BR:
mete03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
tca_00184 (cshA)
Ribosome biogenesis [BR:
mete03009
]
Prokaryotic type
rRNA helicases
tca_00184 (cshA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF5333
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAZ98259
LinkDB
All DBs
Position
complement(144028..145305)
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AA seq
425 aa
AA seq
DB search
MKGLEFSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAI
PVLENLEAERVPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLRR
GVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTM
LFSATVSKPILRIARKYMRNPQVMRVEKKHSPKIDEFYFKTREEDKVELLDWILSSNNIR
MGLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAA
RGIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGREVHRLRRIQSFTGK
RIKQSNMPSPEEIRRGYEMDLREILRRNLESKTYSDSEILESLAGEGYSFRDISHALLDV
LESSK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggattagaatttagtgagtttgatatctcaggggatataaacagggcccttgat
gatatgggatttgagagcacaactccaatccaggcacttacactacctgttacacttgac
ggtatggacgttgttggtgaggcccagacagggaccggaaaaacagctgcattcgccata
ccagtacttgagaaccttgaagccgagagggtgccccaggccctcataatctgtccgaca
cgcgagctctgtctccaggtctcagaggagatcaagaggataggtaaatacatgaaggtg
aaggtcctcgcggtctatggtggccagagtatcggtaaccagatagcacagctaaggagg
ggggttcatgtcatcgttgcaacccctggtagactgatagaccacatcgagagggggaca
gttgatctgggaggtatatccacagttgtccttgatgaggcagatgaaatgctgaacatg
ggattcatagatgacatagagcgtatactatcccatgtacctgagagaaggcagaccatg
ctcttctctgcaacggtttcaaagcccatactcagaattgcaaggaagtacatgaggaac
ccccaggttatgcgtgtggagaagaagcacagccccaagatagatgagttctacttcaaa
accagggaggaggataaggttgagctcctcgactggatactctcatcaaacaatatcagg
atgggactcatattctgtaacaccaagagaagggtccagaggttgagaaggcagctgaac
cgtatgggttactctgcagatgagatccacggtgatctttcacagtcaaagcgtgagcgt
gtcatggagagattcagaaggggagatttcagtctccttgttgcaacggatgttgctgcc
cgtggtattcacgtacccgatgtcgaggccgttgtgaactatgacctgccctttgagaac
gagtactacgttcaccgtataggccgtacagggcgagccggttcaagcgggaagtccttc
accctcgtcgttggaagggaggttcaccgcctgagaaggatccagtcattcacaggtaag
aggataaagcagagcaacatgccctcccctgaggagataaggaggggatatgagatggac
ctcagggagatcctcaggaggaacctggaatcaaagacttacagtgactctgaaatcctt
gagagccttgctggtgagggttacagtttcagggacatctcacacgcccttctggatgta
ctggaatcatccaaataa
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