Methanothermobacter sp. EMTCatA1: tca_00656
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Entry
tca_00656 CDS
T05328
Symbol
rph_1
Name
(GenBank) Ribonuclease PH
KO
K12589
exosome complex component RRP42
Organism
mete
Methanothermobacter sp. EMTCatA1
Pathway
mete03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mete00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
tca_00656 (rph_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mete03019
]
tca_00656 (rph_1)
Messenger RNA biogenesis [BR:
mete03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
tca_00656 (rph_1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
tca_00656 (rph_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
HET-S
Motif
Other DBs
NCBI-ProteinID:
BAZ98730
LinkDB
All DBs
Position
complement(611268..612071)
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AA seq
267 aa
AA seq
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MDIIPEITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGV
KPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLE
KLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKM
QPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTR
DDVLKAVSIAVEKVPQLIEYLDKSMTP
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atggatataatacctgaaattacaagaaagagtataacggaccttataaataataaggaa
cgcattgatggaaggtcacttcatgagttcagggacatatccatcgaaacaggggtgata
tccaaggctgagggttcctcaagggtgaaacttggaaacacccagataattgtgggtgtg
aagccccagataggcgaacccttccctgacacacctgagatgggtgtaatactcaccaac
tccgagctccttccaatggcatcaccgacctttgagcctggaccccctgatgagaggtca
gtggagctgtcaagggttgtggacagatgcataagggagagccggatgatagaccttgag
aagctctgcatcatagagggcagcaaggtctggatgctgttcctggacctgcacatcata
gactatgatggcaacctctttgacgcagcggtccttgcaaccgtggcagccctgctggat
acaaggatacctgcagccgaggttgaggatggtgaggtcgttatcaacagggagaagatg
cagccactccctgtcaacaggaaggccctcatgtgcaccttcgccaagataggaaacgag
atcgtgctcgacccctccctcgaggaggaggacatactcacagcaaggatatccataggt
gttactgaggagggctccatatgcgccatgcagaagggtggtgaggggccactcacaagg
gatgatgtccttaaggcagtctcaattgcagtggagaaggtgccccagctcattgagtac
cttgacaagtcaatgactccctaa
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