Methanothermobacter sp. EMTCatA1: tca_01295
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Entry
tca_01295 CDS
T05328
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
mete
Methanothermobacter sp. EMTCatA1
Pathway
mete03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mete00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
tca_01295 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mete03400
]
tca_01295 (alkA)
Enzymes [BR:
mete01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
tca_01295 (alkA)
DNA repair and recombination proteins [BR:
mete03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
tca_01295 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
OGG_N
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BAZ99345
UniProt:
A0A223ZGT5
LinkDB
All DBs
Position
complement(1180288..1181226)
Genome browser
AA seq
312 aa
AA seq
DB search
MRIPVGDFDLEMTQRSGQTSQPPWREVEGAFRELLIIEGVPCPVEVRNEAGVLRVRPYVD
VPQKTLREKIEYIFDLKFDIEDFYTFLEDKNLSYTLDSSRGLRLFLAKDPFECVISSIAS
ANCSVVRWTRSIEDIRRLWGQAHTFNGETFHTFPSPHVLAGVAEDSLEDLQRAEDNLPSD
FRFNDLRSCGVGYRAPYIRETSRILAEEMDIRRIDGMDYDDARELLLELPGVGPKVADCI
LLYGFRKTEAFPVDVWIRRIMNHIHPGRNFNDRSMVEFARREYGEMAGYVQLYLFNHARK
SGLLDRLRQGTG
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgaggatacccgtgggggactttgaccttgagatgacccagaggagtggacagacctcc
cagccaccctggagggaggttgagggggccttcagggaacttctcatcatcgagggggta
ccctgtccggttgaggtcaggaatgaggcaggggtgctcagggtcagaccctacgtggat
gtacctcagaaaactctcagggagaagattgaatacatattcgacctgaaatttgatatt
gaagatttctacacattcctggaggataaaaacttatcatacaccctggattcatcgagg
gggctgcggctgttccttgcaaaggacccatttgagtgtgtgatatcctcaatagcatca
gccaactgttcggttgtgagatggacaaggtccatagaggacataaggaggctctggggc
caggcccacaccttcaatggcgagaccttccacacattcccctccccacatgtcctggca
ggcgtggctgaggactcccttgaggacctgcagagggccgaggataacctcccctcagac
ttcaggttcaatgacctcagatcctgtggcgtcggctacagggcgccctacatccgggag
acatcgaggatactcgcagaggagatggatatcaggaggatcgatgggatggactatgac
gatgcaagggagctcctccttgaactcccgggtgtgggtcccaaggtcgctgactgcata
ctcctctatggtttcaggaagacagaggccttccctgttgatgtatggatcaggaggatc
atgaaccacatccaccctggcaggaacttcaatgacaggtcgatggtggaattcgcacgg
agggagtacggggagatggccggctatgtgcagctctacctcttcaaccatgccagaaaa
tcggggctacttgataggctcaggcagggcacaggataa
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