Methanothermobacter sp. EMTCatA1: tca_01546
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Entry
tca_01546 CDS
T05328
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mete
Methanothermobacter sp. EMTCatA1
Brite
KEGG Orthology (KO) [BR:
mete00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mete03016
]
tca_01546 (rtcB)
Enzymes [BR:
mete01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
tca_01546 (rtcB)
Transfer RNA biogenesis [BR:
mete03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
tca_01546 (rtcB)
Prokaryotic type
tRNA splicing ligases
tca_01546 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAZ99592
LinkDB
All DBs
Position
complement(1436477..1437925)
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AA seq
482 aa
AA seq
DB search
MSIHEELVKVRESVWEVPTSYKKGMRVPGRIFLREEALRDLEKGAIDQVANVACLPGIQK
FSIGLPDIHFGYGFSIGGVGAFSARTGVISPGGVGFDINCGVRMVRTNLDHEDVRPKIKE
LINTLFTNVPSGVGSKGKIRLKPGEIDEVLENGAEWAVENGYGWDQDLRRLEENGKMEEA
SSEKVSEKAKKRGIPQLGSLGSGNHFLEVQMVDEIFDEEAARVYGVSPGKVAVMIHSGSR
GCGHQVCSDYLRLMDKAYRRYKINIPDRQLACAPVDSDEALDYFQAMAAAANYAWANRQM
IVHWVRESFEAVFGMTAEDMEMEIVYDVAHNIAKKEVHTIKGRETEVFVHRKGATRAFGP
GRDEIPQEYRKIGQPVIIPGTMGTSSYLLHGTEVAMEETFGSTAHGAGRKMSRAGAKKTY
RGEEVQRKLESEGIYVRATSMPVVAEEAPGAYKDVDVVVRTAHETGISRLVARMLPLGVA
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtatacatgaagaactggttaaggtgagagaatccgtatgggaagttccaacatca
tacaagaaggggatgagggtgcccgggaggatcttcctgagggaggaggccctcagggac
cttgagaagggggccatcgatcaggtggccaacgttgcctgtctcccgggtatccagaag
ttctccattggactgccagatattcacttcggttacggcttcagcattggaggtgtgggt
gccttcagcgcccgaacaggagttataagccctggaggtgttggattcgatataaactgt
ggtgtgaggatggtcaggacaaaccttgaccatgaggatgtcaggccaaagataaaggag
ctcataaacacgctcttcaccaatgtcccctccggtgttgggagtaaggggaagatacgc
ctgaaacccggggagatcgatgaggtgcttgaaaacggggctgaatgggccgttgaaaac
ggatacggctgggaccaggacctcaggcgccttgaagaaaacggtaaaatggaggaggcc
agctcagaaaaggtcagtgaaaaggccaagaagaggggcataccccagctcggatccctt
ggctcaggtaaccacttccttgaggtccagatggttgatgagatcttcgatgaggaagca
gccagggtctacggtgtgagccccggaaaggtcgccgtcatgatacactcaggttcacgt
ggctgcggccaccaggtctgctcagattacctcaggctcatggacaaggcatacaggagg
tacaagataaacatacctgacaggcagcttgcatgcgcccctgtggactcggatgaggcc
ctggattacttccaggccatggcagcagctgcaaattatgcctgggccaaccgtcagatg
atagtccactgggtcagggaatcctttgaggccgtcttcggtatgactgcagaggacatg
gagatggaaatcgtctatgacgtggcccacaacatagccaagaaggaggtccacaccata
aagggtcgtgaaacagaggtattcgtccacaggaagggggctacaagggcctttggaccg
ggaagggatgagatacctcaggagtaccggaaaatcggtcaaccggtgataataccaggg
acaatgggaacatcatcctaccttctccacggaacagaggttgccatggaggagaccttc
ggttcaaccgcccacggcgccgggcgtaagatgagccgtgcaggtgccaagaagacctac
cgcggcgaggaggtccagaggaaacttgaaagtgagggcatctatgtcagggccacctcc
atgcctgtggttgcagaggaggccccgggggcctacaaggacgtggacgtcgttgtgaga
accgcccatgaaacaggaatatcccgccttgtggcgaggatgctccccctcggcgttgcc
aagggatag
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