KEGG   Methanofervidicoccus sp. A16: CFE53_02255
Entry
CFE53_02255       CDS       T06169                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
metf  Methanofervidicoccus sp. A16
Pathway
metf03030  DNA replication
metf03410  Base excision repair
metf03420  Nucleotide excision repair
metf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:metf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CFE53_02255
   03410 Base excision repair
    CFE53_02255
   03420 Nucleotide excision repair
    CFE53_02255
   03430 Mismatch repair
    CFE53_02255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:metf03032]
    CFE53_02255
   03400 DNA repair and recombination proteins [BR:metf03400]
    CFE53_02255
Enzymes [BR:metf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CFE53_02255
    6.5.1.6  DNA ligase (ATP or NAD+)
     CFE53_02255
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CFE53_02255
DNA replication proteins [BR:metf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CFE53_02255
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CFE53_02255
DNA repair and recombination proteins [BR:metf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CFE53_02255
   NER (nucleotide excision repair)
    Other NER factors
     CFE53_02255
   MMR (mismatch excision repair)
    Other MMR factors
     CFE53_02255
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DUF6120
Other DBs
NCBI-ProteinID: AXI25040
LinkDB
Position
477828..479570
AA seq 580 aa
MLFLDVCKVFKKIEDTTKRTDKIYLFIKLIRMAEKENSPSSLRKICYLSIGRVYPEYENK
ELGIGPNMLIEAVKSIGIREKDLLESIKETGDISISIEKLSSQIKQASLFQKHLTLDDVY
DTLKKVGEIEGESSQKKKIRYISNLFLMATPLERRYIARIILEDMRIGMNVPTILSAFSK
YFGIPKEKLEKIYAVVNDIGLIGEKLLMGVDIDRDEDLKLKLFRPIRPMLAQIAPSIKEA
IEEIGTPQFETKYDGARLQIHRSGDKVKIYTRKLEDITNSLPEIVEEIKKIERDNFIMEG
ECVAIDLNTGHPRPFQDILRRLRRKYNIEKMKEEVNLRVYLFDILYYNEPLLDVPLKERR
RILEEILSEDNDWEKKREKIEREIRSDKKIDISYKLVTRDVKKAEEFYKWSLGIGHEGVM
IKNLKAVYTPGSRVRTMYKFKPTLESLDVVITKAKIGMGKRKDWYGSFEIAVRDEDGNLH
PIGHVGSGLTEEELDRLSKMIDSIKVKEVGDEVIVKPEIVLEVTYEEIQESDKYSCGYAL
RFPRVVRIREDRPPEDINTLEDVKRIFQIQKGRRSNEEEL
NT seq 1743 nt   +upstreamnt  +downstreamnt
atgctatttttagacgtctgtaaggtattcaaaaagatagaagacactactaagagaaca
gataagatataccttttcattaagttaataaggatggcggagaaggaaaattctccgtca
agtttaagaaagatatgttatctctccatcggtagggtatatccagagtatgaaaataag
gagttagggattggccccaatatgctaatagaggcagttaaaagtataggtatcagggaa
aaagatctacttgaatctatcaaagagactggagatataagtatatccattgagaagtta
agttctcaaataaaacaggcatctctttttcaaaaacacctaactcttgacgatgtatac
gacactttgaaaaaggtaggtgaaatagagggagagagttcccagaagaaaaaaataagg
tatatttctaatttattcctaatggcaacacctcttgagaggagatatattgcaaggatt
atcctagaggatatgagaatagggatgaacgtcccaactatcctaagtgccttttcgaag
tacttcgggattcccaaggagaagttggagaagatatacgcagttgtaaatgatatagga
cttattggggagaagttattaatgggggttgatatagacagggacgaggatctgaagtta
aaactctttagacctataagaccaatgttagcccagatagccccatctataaaggaggct
atagaggagataggcactccacagtttgagacgaagtacgacggtgcaaggctacagata
cacaggagtggagataaggttaagatatacaccaggaagttagaggatatcaccaactcc
ctccctgagatcgtggaggagataaagaagatagagagggataactttataatggaagga
gaatgtgtggctatagacctaaatactggacatccgagaccatttcaggatattctcagg
aggcttaggaggaagtacaatatcgagaagatgaaagaggaggttaatctaagggtttac
ctctttgatatcttatactacaatgaacctctgttagatgttccactgaaggagcgaagg
aggatattggaggagatcctgtccgaggataacgactgggagaagaagagggagaagata
gagagggagatcagatcggataagaagatagatatatcttataaattagtgaccagggat
gtaaagaaggcagaggagttctacaagtggagtttaggtatagggcatgagggagttatg
ataaagaacctgaaggctgtatatacccctggaagtagagttagaaccatgtacaagttt
aaacctacactggagagtctagacgtagttattacaaaggcaaagatagggatgggtaag
aggaaggattggtatggatcctttgagattgcagttagggatgaagatggaaacctccac
cctataggacatgttggcagtggtttaactgaggaggagttagataggttaagtaagatg
atagattctataaaggtgaaagaggtaggagatgaggtaatagttaagccagagatcgta
ttagaggttacctacgaggagatacaggagtctgacaagtacagttgtggttatgcattg
aggttcccgagggttgtgagaataagggaggacagacctcctgaagatataaacacctta
gaggatgttaaaaggatattccagatacagaaggggaggaggagtaatgaagaagaatta
taa

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