Methanofervidicoccus sp. A16: CFE53_06180
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Entry
CFE53_06180 CDS
T06169
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
metf
Methanofervidicoccus sp. A16
Pathway
metf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFE53_06180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metf03019
]
CFE53_06180
Messenger RNA biogenesis [BR:
metf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFE53_06180
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
PDEase_II
ODP
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AXI25727
LinkDB
All DBs
Position
1345633..1346979
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AA seq
448 aa
AA seq
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MQLEIVAIGGYEEVGKNMTAINVDGEIIIFDMGLMLDRVLIHEDTDISKMHSLNLIEMGI
IPDDTVMKNIEGEVKAIVVSHGHLDHIGAITKLAHRYNAPIIGTPYTIELIKREILSEKK
FDVRNPLVTLNAKESIDLTPNLTLEFIKITHSIPDAVLPVLHTPYGAIVYGNDFKFDNFP
IVGERPDYRAIKKVGKEGVLCMISESTRVEYEGKTPSEKIASDLLKNDLLGADNQSNAVI
VTTFSSHIARIKSATEIGEKMGRTPILIGRSMVKYCGIAEDIGIVKFPEDTRIAGDPSAV
DRIFREIMKEGKENYLLIVTGHQGEEGAVLSRMATDKTPFKFEKYDQVVFSADVIPNPMN
AAQRYMLEARLKRLGVRVFKGAHVSGHASKEDHRDMIRWVNPEHIIPSHGDFNLTTAYAK
LAEEEGYRLGEDVHLLRNGQSLKFERII
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ttgcagttggaaatagttgctattggaggatacgaggaagttggaaaaaatatgactgct
attaatgtagacggtgaaataataatattcgatatgggcttaatgttagatagagtactg
atacatgaggatacagatatatcgaaaatgcacagtttaaatttaattgagatggggata
attccagatgatacagttatgaagaatatcgaaggggaggtcaaggctatagtggtctcc
catggacacctagatcacataggggcgataacgaagttggcccatagatataacgctcca
attatcgggactccctatactatagaacttatcaagagagagatactaagtgaaaagaag
tttgatgtaagaaaccctttagttacactgaatgcaaaggagtccatagatctaacacct
aatttaaccttggaatttataaagataacccatagtatcccagatgcagttctcccagtt
ctccatacaccttacggtgccatagtttatggaaacgatttcaaatttgacaactttcct
attgtaggggagaggccagattatagagccataaagaaggtaggtaaggagggagtacta
tgtatgatatcggagagtacacgagttgagtatgagggaaaaaccccctctgaaaagata
gcctcagatcttttaaaaaacgatctattaggtgcagacaatcagtcaaatgcagtgata
gttacaaccttctcctctcacatagccaggataaagtctgcaacagagattggagagaag
atgggtagaacacctatacttataggaagatccatggtgaagtactgtggtatagctgag
gatattggtattgtaaagtttccagaggatacaaggatagctggagatccctctgctgta
gataggatattccgggagataatgaaagagggcaaggagaactatttacttatagtaacg
ggacaccagggagaggagggggcagttctatctcggatggcaactgacaagacacctttt
aaatttgagaagtacgatcaggttgtattctctgcagatgtaatacctaatcctatgaac
gccgcccagaggtatatgttagaggcccgtttaaagagattgggagtaagggtattcaag
ggagcccatgtatctggacatgcctcaaaggaggatcacagggacatgataagatgggtt
aaccctgagcatataataccctctcatggggatttcaaccttacaactgcctatgccaag
ttggcagaggaggaggggtataggttaggggaggatgtacatttacttagaaacggtcaa
agtttgaagtttgagaggattatataa
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