Methanofervidicoccus sp. A16: CFE53_06310
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Entry
CFE53_06310 CDS
T06169
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
metf
Methanofervidicoccus sp. A16
Brite
KEGG Orthology (KO) [BR:
metf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metf03016
]
CFE53_06310
Enzymes [BR:
metf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CFE53_06310
Transfer RNA biogenesis [BR:
metf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CFE53_06310
Prokaryotic type
tRNA splicing ligases
CFE53_06310
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AXI25752
LinkDB
All DBs
Position
1382266..1383708
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AA seq
480 aa
AA seq
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MEDILVKIDEYIWELPKGYKECMLVPGRLYLNDELVEQLEREVLEQVANVACLPGIQKYS
LAMPDCHYGYGFCIGGVAAFDEKSGVISPGGVGFDINCGVRLIRTNLTREEIQPYMKELV
KTLFRNIPSGLGSKGKIRLSKGEIDEVLEEGVYWAVRNGYGWKRDVKYIEENGCVREADA
SLVSDSAKKRGLPQLGSLGSGNHFLEIQYVDKVFDEKVAKVYGVEKDQVLVMIHSGSRGL
GHQICADYLRYMEKAAKKYGIKLPDRQLACAPITSEEGIRYFKAMNCGANYAWTNRQLIT
HWVRESFEDVLRIPAEDLEMDIIYDVAHNIAKREEHKVDGKLKKLMVHRKGATRSFGPGC
EDIPAKYESVGQPVILPGDMGTASYLMHGTERAMEETFGSTAHGAGRVLSRAKALKIYSS
KEIKSKLEDMGIYVMADSRGVLAEECPDAYKDIDIVADIVHNAGISLKVCRMRPMGVIKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
ttggaggatatactagttaaaatcgatgaatatatctgggaacttccaaaggggtataag
gaatgtatgctagttcctggaagattgtatctaaacgatgaacttgtggagcagttggag
agggaggtattagaacaggtggcaaatgtggcctgccttcctggaattcagaagtactct
cttgccatgccagactgtcactatggttatgggttctgtataggtggggttgcagcattt
gatgagaaaagtggtgtaataagtccaggaggagtaggttttgatataaactgtggtgtt
agacttataaggacaaaccttacaagggaggagatccagccttatatgaaggagttagtt
aagaccctctttaggaatataccctcaggtttaggtagtaagggaaagataagattaagt
aagggagagatagacgaggtactggaggagggagtctactgggcagttagaaatggctac
ggatggaagagggatgttaagtatatagaggagaatggatgtgtaagagaagccgatgcc
tccctagtatctgacagtgctaagaagagggggctacctcagttaggttccctcggtagt
ggtaatcacttcttagagatccagtacgtagacaaggtatttgacgagaaggttgcaaag
gtatacggtgttgaaaaggatcaggtattggtgatgatccacagtggttcaaggggatta
ggccatcagatatgtgcagattaccttaggtacatggagaaggccgctaaaaagtacggt
ataaaactaccagatagacagttggcatgtgctccaataacctcggaggagggtataaga
tactttaaggccatgaactgtggtgcaaattacgcctggacaaataggcaacttataact
cattgggtaagggagagtttcgaggatgtactaaggatacctgcagaggatctggagatg
gatattatatacgacgtagcccataacatagcaaagagggaggaacataaggtagatggt
aaattgaagaaactaatggtacatagaaagggtgctacaaggtccttcggtccaggttgt
gaggatatacctgcaaagtatgaaagtgttggccagcctgtcatactcccaggagatatg
ggaactgcatcctatctaatgcatggtacagagagggctatggaggagacctttggatcc
actgcccatggagctgggagagttctcagtagggctaaggcactgaagatctacagttca
aaggagatcaaaagtaaattggaagatatgggtatatacgttatggccgattctagaggt
gttcttgcagaggagtgtcctgacgcttataaagatattgacatcgtggcagatatagtc
cataatgcaggtatatctctgaaggtttgtagaatgagacctatgggtgttattaagggt
taa
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