Methyloligella sp. GL2: HT051_11675
Help
Entry
HT051_11675 CDS
T06641
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
metg
Methyloligella sp. GL2
Pathway
metg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
metg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HT051_11675 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metg03021
]
HT051_11675 (rpoD)
Transcription machinery [BR:
metg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HT051_11675 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF16
Mod_r
Motif
Other DBs
NCBI-ProteinID:
QKP78039
LinkDB
All DBs
Position
complement(2489592..2491583)
Genome browser
AA seq
663 aa
AA seq
DB search
MAAKTAEAQTQEQAPAETQDGPVLDMSDAAVKKLIKTAKARGFVTYDELNEVLPSEEVSS
EQIEDTMSMLSDMGINVIDSDEAEEQEGEGGGAVAKVQAVAKPETTAKEPTERTDDPVRM
YLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWREELNEGKILLRD
IIDLEATYAGPDAKAPAASESEDGKADEDEAKSEKAEGDEEEGEGEGESEDDYDDDDDME
NNMSLAAMEAELKPKVVETFDLVATNYKKLRKLQDQLVEKAMKNESLSSAQEKRYDALKD
EIVAEIKSLSLNANRIESLVETLYDINKKLMGYEGRLLRLAESYGVARTDFLEEYRGNEL
DPNWLRRVGRLKKKGWSDFIHDEKGIVKDIRGEIQNLAAETGLQIGEFLRIVSIVKKGER
EARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
ATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMP
LEKVRKVLKIAKEPISLETPIGDEEDSYLGDFIEDKNAVLPIDAAIQSNLRETTTRVLAS
LTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSF
LDS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcagccaaaaccgctgaagcccagacccaagaacaagccccggcagagacgcaggac
ggccccgtcctggatatgtccgatgccgcggtcaaaaagcttatcaagaccgcgaaagcc
cgcggcttcgtcacctatgacgagctgaacgaggtcctcccgtccgaggaagtctcctcc
gagcagatcgaggacaccatgtcgatgctgtccgacatgggcatcaacgtcatcgattcc
gacgaggccgaggagcaggaaggcgagggcggcggcgcggtcgccaaggtgcaggctgtc
gccaaacccgagaccactgccaaagagccgaccgagcgcaccgacgatccggtgcgcatg
tatttgcgcgagatgggctcggtggagctgctctcccgcgagggcgaaatcgccatcgcc
aagcgcatcgaggccggccgcgaggccatgatcgccgggctctgcgaaagcccgctcacc
tttcaggccatcatcatttggcgcgaggagctgaacgaaggcaagatcctcctgcgcgac
atcatcgacctcgaggccacctatgccggccccgacgccaaggccccggccgcctccgag
agcgaggacggcaaggccgacgaggacgaggccaaatccgagaaagccgagggcgacgaa
gaagagggcgagggcgagggcgaatccgaagacgattacgacgacgatgacgacatggag
aacaacatgtctctcgccgccatggaggccgagctcaagcccaaggtggtggagaccttc
gatctcgtcgccaccaactataagaagctccgcaagctgcaggatcagctcgtcgagaag
gcgatgaagaacgagtcgctctcctccgctcaggagaagcgctacgacgccctgaaggac
gaaatcgtcgccgagatcaagtcgctctccctcaatgccaaccgcatcgagagcctggtc
gagacgctttacgacatcaacaagaagctgatgggctatgagggccgcttgctgcgcctg
gccgagagctatggcgtcgcccgcaccgacttcctggaggagtatcgcggcaacgagctg
gaccccaactggctgcgccgcgtcggccgcctgaagaagaagggctggtcggacttcatc
catgacgagaagggcatcgtcaaagacatccgcggcgagattcagaacctcgccgccgag
accggcctgcagatcggcgagttcctccgcatcgtctccatcgtgaagaagggcgagcgc
gaggcgcgcatcgccaagaaggagatggtcgaggccaacctgcgcctggtgatctccatc
gccaagaaatacaccaaccgcggcctgcaattccttgatttgattcaggaaggcaatatc
ggcctgatgaaggcagtggataagttcgaataccgccgcggctacaaattctccacctac
gccacctggtggatccgtcaggccatcacccgctccatcgccgaccaggcgcgcaccatc
cgcatcccggtgcatatgatcgagacgatcaacaagatcgtccgcaccagccgccagatg
ctgcacgagatcggccgcgagccgaccccggaagagctggccgagaagctggccatgccg
ctggagaaggtgcgcaaggttctgaagatcgccaaggagccgatctctctcgaaacgccg
atcggcgacgaggaagacagctatctcggcgatttcatcgaggataagaacgccgtgctg
ccgatcgatgcggccatccagtccaatttgcgcgagaccaccacgcgggtgctcgcctcg
ctcaccccgcgcgaggagcgcgtgctccgcatgcgcttcggcatcggcatgaataccgac
cacaccctcgaagaggtcggccagcaattctccgtcacccgcgagcgcatccgccagatc
gaggccaaggcactgcgcaagctcaagcacccgtcgcgttcgcggaagctgcgctcgttc
ctggatagctag
DBGET
integrated database retrieval system
