Methanobacterium sp. MB1: MBMB1_0948
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Entry
MBMB1_0948 CDS
T02957
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
meth
Methanobacterium sp. MB1
Pathway
meth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MBMB1_0948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meth03019
]
MBMB1_0948
Messenger RNA biogenesis [BR:
meth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MBMB1_0948
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Lactamase_B_3
Anti-Pycsar_Apyc1
OKR_DC_1_N
Motif
Other DBs
NCBI-ProteinID:
CDG65050
LinkDB
All DBs
Position
complement(924283..925779)
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AA seq
498 aa
AA seq
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MISIDFFGGVDEIGGNKIRVNDNNTSFFFDFGMGFSQANTYLSEFLQPRKANGICDFIEL
GLLPYIEGIYREDYLRHVGLPYPSEPSVDGVLISHSHIDHVAYIHHLREDIPIYLTKESK
LILQALEETGAASFSEYLRLNKSFYLKPKKRGEGYMRSRSNIVERDIHVVEPYQKFEIGN
FKLKAAPVDHSLPGATAYMGENDEETIVYTGDLRFHGRHPELTDKFVKEAKKSNPTIMIC
EGTRINSQTNVNEFDIEKRAVEAVDHCKGLVVVNYPMRDLDRLLTFYKVAEDTDRKLVVS
LKQAYILNLFQEYPDYPGLDEVMIYKPRKGWGLVGDNSFACVDNEWLCASLIDEDIDTNH
SLRDYKMWERKLLENNNVLTYHDLQENPQDYIFRCDFFELKELIDIKPQNGIYIKSSTEP
FDDQMEINEKKVRNWLKLFNLELLNKCFHASGHACGPEIMEMIREINPDKLYPVHTTHKE
KFLELADDGIDVIFPHKQ
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ttgatcagtattgatttttttggaggagtagatgaaattggaggaaataaaataagggtt
aatgataataacacctcattcttttttgattttggaatgggattttcccaggccaatacc
tatttatcagagtttctgcaaccccgcaaagccaatggaatctgtgactttattgaatta
ggcctattaccctacatagaaggtatttatcgtgaagattacctgcggcatgtgggtctg
ccttacccctctgaaccatcggttgatggagtgttgattagtcattcccacatagaccac
gtagcctatatacatcatctccgggaagatattcccatctatctcaccaaggaatccaaa
cttattttacaagcattggaagaaacaggtgcggcatccttctctgaatatcttcgttta
aataaatcattttacctaaagcccaaaaagcgtggcgagggttacatgcgctcccggtct
aacatagttgaacgggacatccatgtagtggaaccctaccaaaaatttgaaattgggaat
tttaaactcaaagctgccccagttgaccattcactacccggtgcaactgcatatatggga
gaaaacgatgaagaaaccatagtatacacaggggaccttcgttttcatggaaggcaccct
gaacttaccgataaatttgtcaaagaagctaaaaaatctaaccctactataatgatttgt
gaaggtactcgtattaacagtcaaaccaatgtgaatgaatttgatatcgaaaaacgtgca
gtggaagctgttgatcactgtaaaggtctggtcgtggttaattatcctatgcgggatctg
gaccggcttttaaccttctataaagttgcagaggacacggaccgaaaactggtagtaagt
cttaaacaggcctatattctgaacttatttcaggaataccctgattatccagggctagat
gaggttatgatctacaaacctcgtaaaggatggggtctagtgggagataacagttttgcc
tgtgtggacaatgaatggctgtgtgcctccctcattgatgaggatattgatactaaccat
tctctccgagattataaaatgtgggaaagaaaattactggagaataataatgttttaacc
tatcatgatctccaggaaaatccacaggattacatatttcgctgtgattttttcgagcta
aaggaacttatcgatataaaaccccaaaatggtatatatatcaaatctagtaccgaacca
tttgatgatcagatggaaataaatgaaaagaaggtacgtaattggttgaagttattcaac
ttagaacttttaaataaatgcttccatgcatctggacatgcctgtggcccggagataatg
gagatgatacgggagataaatcccgataaattatacccagtacatactacccataaggaa
aaattcctagaactggctgatgatggaatagatgtaatttttccccacaaacagtaa
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