Methylobacterium radiodurans: DK427_08645
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Entry
DK427_08645 CDS
T05919
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
meti
Methylobacterium radiodurans
Pathway
meti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK427_08645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meti03019
]
DK427_08645
Messenger RNA biogenesis [BR:
meti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DK427_08645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AWN35807
UniProt:
A0A2U8VQ86
LinkDB
All DBs
Position
1884284..1885957
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AA seq
557 aa
AA seq
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MTTKQDELVFLPLGGVGEIGMNAALYGFGPEKGRKWIMVDCGMGFAGEEAMPGIDLMFPD
LSFIEERRKDLLGIFITHAHEDHIGAISELWPRLKVPVYATRFAKNLLETRRLGEPGAPK
VELREVKPGKRVTVGPFDLEFVPVSHSIPESNAIAIRTAAGLVVHTGDWKIDPTPVAGSV
TSPEAFKALGDEGILALVCDSTNVVREGFSPSEAEVAQTMRKLIAEAPHRVAVTTFASNV
ARIRAVAEAAQACGREVIAVGRAMDRVIDVARECGYLDGLPDFRRADSWKSLPREKVVAL
LTGSQGEPRAALARVSRRDHPDIQLAGGDRVIFSSRAIPGNERDVGSIINDLIEQGVEVI
TDRTELVHVSGHPRRDEMVEMYAWTRPGTAIPVHGEALHLDEHARFARAQGVQNVVKARN
GSLVRLAPGKPEVITHVKAGRLFKDGNVLIDDKDRAIPERRKLAQAGLVSVAIAIDEDGV
VLGEPAIDIIGLPNRGRTGEPLIEAVVDAVTDTLAGLSKGKLKDSEGVEKTVDRAVRTAV
NEAWGKKPACHVQVVEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgaaacaggacgagctcgtcttcctgccgctcggcggggtgggcgagatcggg
atgaacgcggcgctttacggcttcgggccggagaaggggcgcaagtggatcatggtcgat
tgcggcatgggcttcgcgggcgaggaggcgatgcccggcatcgacctgatgttcccggac
ctcagcttcatcgaggagcgccgcaaggatctgctcgggatcttcatcacccacgcgcac
gaggaccatatcggggcgatcagcgaattgtggccacgcctcaaggtgccggtctacgcc
acgcgcttcgccaagaacctgctggagacccgccgcctcggcgagccgggcgctccgaag
gtcgagctgcgcgaggtgaagcccggtaagcgggtgacggtcggtcctttcgatctcgaa
ttcgttcccgtctcgcactcgatccccgaatcgaacgctatcgcgatccgcaccgccgcg
ggtctcgtggtgcacacgggcgactggaagatcgacccgacgccggtcgcgggctcggtc
acctcgcccgaagcgttcaaggcgctcggcgacgagggcatcctggcgctcgtctgcgac
tccaccaacgtcgtgcgcgagggtttctcgccgtccgaggccgaggtcgcgcagaccatg
cgcaagctcatcgccgaggcgccgcaccgggtcgcggtgacgaccttcgcgtcgaacgtc
gcccgcatccgcgccgtcgccgaggctgcccaggcctgcggccgcgaggtgatcgcggtc
ggccgcgcaatggaccgggtcatcgacgtcgcccgcgagtgcggctacctcgacggcctg
ccggacttccgccgcgccgattcgtggaagagcctgccgcgcgagaaggtcgtggcgctg
ctcaccggctcgcagggcgagccccgcgccgcgctcgcccgcgtctcccgccgcgaccat
cccgacatccagctcgccggcggcgaccgggtgatcttctcctcgcgcgccatccccggc
aacgagcgcgacgtcggctccatcatcaacgacctgatcgagcagggcgtcgaggtgatc
actgaccgcaccgaactcgtccacgtctccggccacccgcgccgggacgagatggtcgag
atgtatgcctggacccggcccggcaccgcgatcccggtccacggcgaggcgctccacctc
gacgagcacgcccgcttcgcccgcgcgcagggcgtgcagaacgtggtgaaggcccgcaac
ggcagcctggtccgcctcgcgcccggcaagccggaggtgatcacccacgtcaaggccggc
cgcctgttcaaggacggcaacgtgctgatcgacgacaaggaccgggcgattcccgagcgg
cggaagctcgctcaggccggcctcgtctcggtcgccatcgccatcgatgaggacggggtg
gtgctgggcgagcccgccatcgacatcatcggcctgccgaaccgcggccgcaccggcgag
ccgctgatcgaggcggtggtcgacgcggtcaccgacaccctggccgggctgtcgaagggc
aagctgaaggactcggaaggcgtcgagaagaccgtggaccgggccgtccggaccgcggtc
aacgaggcctggggcaagaagcccgcctgccacgtgcaggtggtcgaggtctga
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