Methylobacterium radiodurans: DK427_14025
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Entry
DK427_14025 CDS
T05919
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
meti
Methylobacterium radiodurans
Pathway
meti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK427_14025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meti03019
]
DK427_14025
Enzymes [BR:
meti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DK427_14025
Messenger RNA biogenesis [BR:
meti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DK427_14025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Pro-rich
Motif
Other DBs
NCBI-ProteinID:
AWN36711
UniProt:
A0A2U8VTC9
LinkDB
All DBs
Position
complement(2997970..2999457)
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AA seq
495 aa
AA seq
DB search
MTQFTDFGLAQPVLRALSEAGYTAPTPIQAQAIPPAMQGRDLCGIAQTGTGKTAAFALPI
LHRLSLSDRRAPRRGCRVLVLSPTRELANQIADSFADYGRHLPYTTTVVFGGVTIGRQER
ALAPGVDVLVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVRMLPQK
RQSLFFSATMPKNIAGLAEQYLSDPVQVAVTPVATTAERVEQQVMFVHTGAKQALLGHIL
RDPKIDRVLVFTRTKHGADRVVRGLDKVGIVGAAIHGNKSQPQRERALAAFRDGTCRVLV
ATDIAARGIDVEGVTHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRDI
ERLTRQKVPVAGFPEGFTPPSRQEAAEIAASEERRPERPQQRNGGRQGQPRQGQARHAQG
AGGQGRPQAARPGEPGRQGRPPQGRPQQGRREEPRQDRAARPDGRPAGGQARRGNRPQGG
GEGRAIGWLERAPRS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgacccagttcaccgatttcggcctcgcccagcccgtgctccgggccctcagcgaggcc
ggctacaccgcgcccacgccgatccaggcgcaggccattccccccgccatgcagggccgc
gacctgtgcggcatcgcccagaccgggaccggcaagaccgcggccttcgcgctgccgatc
ctgcaccggctctcgctctcggaccgccgcgccccgcgccgcggctgccgggtgctggtg
ctctcgccgacccgcgagctcgccaaccagatcgccgattccttcgccgattacggccgc
cacctgccctacaccaccaccgtggtgttcggcggcgtcaccatcggccgccaggagcgg
gcgctggcgccgggcgtcgacgtgctcgtcgccaccccgggccgcctcatcgacctcgtc
gaccggcgcgccctgacgctggagggcgtcgagatcctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccacgccctcaagcgcatcgtgcggatgctgccgcagaag
cgccagagcctgttcttctcggccaccatgccgaagaacatcgctggattagccgagcag
tacctctccgatcctgtgcaggtcgccgtcacccccgtcgccacgaccgccgagcgcgtc
gagcagcaggtgatgttcgttcacaccggtgccaagcaggcgctgctcggccacatcctg
cgcgatccgaagatcgaccgcgtgctggtcttcacccgcaccaagcacggcgccgaccgc
gtggtgcgcgggctcgacaaggtcgggatcgtcggcgcggcgatccacggcaacaaatcg
cagccccagcgcgagcgggcgctggccgccttccgcgacggcacctgccgcgttctggtg
gccaccgacatcgccgcccgcggcatcgacgtcgagggcgtgacccacgtcgtcaacttc
gacctgccgaacgtgccggagagctacgtccaccgcattgggcgcaccgcgcgggccggg
gcagacggcctcgccatctcgttctgcaacgacgaggagaaggcgtatctgcgcgacatc
gagcgcctgacccgccagaaggtgccggtggcgggcttccccgagggcttcaccccgccg
tcccgccaggaggccgccgagatcgcggcctccgaggagcgccggcccgagcggccgcag
cagcgcaacggcgggcgccagggccagccccgccagggtcaggcgcgtcacgcacagggt
gccggcggccagggccggccgcaggccgcgcgtcccggcgagcccggacgtcagggccgg
ccgccgcaaggccgtccccagcagggccgccgcgaggagcctcgccaggatcgggcggcg
cgcccggacggccgccccgcgggcggccaggcgcgccgtggcaaccgcccgcagggcggg
ggcgagggccgtgccatcggctggctggagcgcgccccgcgctcctga
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