Methanothermobacter sp. THM-2: FZP68_01195
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Entry
FZP68_01195 CDS
T07724
Name
(GenBank) exosome complex protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
metj
Methanothermobacter sp. THM-2
Pathway
metj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FZP68_01195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metj03019
]
FZP68_01195
Messenger RNA biogenesis [BR:
metj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FZP68_01195
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
FZP68_01195
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
S1
RRP40_S1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QHN07508
UniProt:
A0A6B9TIM9
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Position
232384..233229
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AA seq
281 aa
AA seq
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MILVKDKDLVVPGQILAENDYYPGMGTFKEDSRICSSLVGLVSVRNKRINVIPLQSKYIP
KRGDVIIGEITDIRFSMWGLDINSPYTGMLPASEVFGKDKRELEKVFEIGDVLLLRVVDV
DEVKKVKLGLKGRGLGKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTGCDIVVGQNGV
VWIKGDPQMERIAEKVILMIDREAHTSGLTDRVRELLDKLTVSEEETPTEHEGETYHESG
EAPPEPESTEEKMEEEESPDLEERDEEETSEGIEEDSKSDE
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
gtgatacttgtaaaggataaggacctggttgttccaggtcagatactggcagaaaacgat
tactaccctggtatgggcaccttcaaggaggatagcaggatatgctcctcccttgttgga
ctcgtttctgtgaggaataaaaggataaacgtgatacccctccagagcaaatacatcccc
aagaggggcgacgttattataggtgaaataacagatataaggttctcaatgtggggcctt
gacataaactccccctacacaggcatgttgccggcatcagaggtttttggtaaggataag
agggagcttgaaaaggtctttgagatcggcgacgttcttcttttaagggtagtggacgtt
gatgaggttaagaaggttaaactcggccttaagggaagaggtcttgggaaattcagggac
ggcatactggtctacataacacccaccaaggtgccgaggctcataggtaaacgcggctca
atgataaacatggtaaaggagaaaaccggctgtgacatcgtcgtgggccagaacggtgtt
gtctggatcaagggagacccccagatggagaggatagctgaaaaggttatactcatgata
gaccgtgaggcccatacatcagggctcacagacagggtaagggaactccttgataaactc
acagtgtcagaggaggaaactcccaccgaacatgaaggagaaacttatcatgaatccggg
gaggccccacctgaacctgaaagcactgaagagaaaatggaagaggaagaatcccctgat
cttgaggaaagggatgaggaggagacctctgaagggatagaagaggatagtaagtctgat
gagtag
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