KEGG   Methanothermobacter sp. THM-2: FZP68_01195
Entry
FZP68_01195       CDS       T07724                                 
Name
(GenBank) exosome complex protein Rrp4
  KO
K03679  exosome complex component RRP4
Organism
metj  Methanothermobacter sp. THM-2
Pathway
metj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:metj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FZP68_01195
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:metj03019]
    FZP68_01195
Messenger RNA biogenesis [BR:metj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     FZP68_01195
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     FZP68_01195
SSDB
Motif
Pfam: ECR1_N_2 KH_6 ECR1_N KH_1 RRP4_S1 S1 RRP40_S1 KH_2 KH-I_KHDC4-BBP KH_KhpA-B
Other DBs
NCBI-ProteinID: QHN07508
UniProt: A0A6B9TIM9
LinkDB
Position
232384..233229
AA seq 281 aa
MILVKDKDLVVPGQILAENDYYPGMGTFKEDSRICSSLVGLVSVRNKRINVIPLQSKYIP
KRGDVIIGEITDIRFSMWGLDINSPYTGMLPASEVFGKDKRELEKVFEIGDVLLLRVVDV
DEVKKVKLGLKGRGLGKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTGCDIVVGQNGV
VWIKGDPQMERIAEKVILMIDREAHTSGLTDRVRELLDKLTVSEEETPTEHEGETYHESG
EAPPEPESTEEKMEEEESPDLEERDEEETSEGIEEDSKSDE
NT seq 846 nt   +upstreamnt  +downstreamnt
gtgatacttgtaaaggataaggacctggttgttccaggtcagatactggcagaaaacgat
tactaccctggtatgggcaccttcaaggaggatagcaggatatgctcctcccttgttgga
ctcgtttctgtgaggaataaaaggataaacgtgatacccctccagagcaaatacatcccc
aagaggggcgacgttattataggtgaaataacagatataaggttctcaatgtggggcctt
gacataaactccccctacacaggcatgttgccggcatcagaggtttttggtaaggataag
agggagcttgaaaaggtctttgagatcggcgacgttcttcttttaagggtagtggacgtt
gatgaggttaagaaggttaaactcggccttaagggaagaggtcttgggaaattcagggac
ggcatactggtctacataacacccaccaaggtgccgaggctcataggtaaacgcggctca
atgataaacatggtaaaggagaaaaccggctgtgacatcgtcgtgggccagaacggtgtt
gtctggatcaagggagacccccagatggagaggatagctgaaaaggttatactcatgata
gaccgtgaggcccatacatcagggctcacagacagggtaagggaactccttgataaactc
acagtgtcagaggaggaaactcccaccgaacatgaaggagaaacttatcatgaatccggg
gaggccccacctgaacctgaaagcactgaagagaaaatggaagaggaagaatcccctgat
cttgaggaaagggatgaggaggagacctctgaagggatagaagaggatagtaagtctgat
gagtag

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