Methanothermobacter sp. THM-2: FZP68_05625
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Entry
FZP68_05625 CDS
T07724
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
metj
Methanothermobacter sp. THM-2
Brite
KEGG Orthology (KO) [BR:
metj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metj03016
]
FZP68_05625
Enzymes [BR:
metj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FZP68_05625
Transfer RNA biogenesis [BR:
metj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FZP68_05625
Prokaryotic type
tRNA splicing ligases
FZP68_05625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QHN08258
LinkDB
All DBs
Position
complement(1086568..1088016)
Genome browser
AA seq
482 aa
AA seq
DB search
MDIREDLVKVRESVWEVPTSYKKGMRVPGRIFLKDEALRDLEKGAVDQVANVACLPGIQK
FSIGLPDIHFGYGFSIGGVGAFSARTGVISPGGVGFDINCGVRMVRTNLDHEDVRPKIKE
LINTLFTNVPSGVGSKGKIRLRPGEIDEVLENGAEWAVENGYGWDQDLKFLEENGKMEDA
SADKVSDKAKKRGIPQLGSLGSGNHFLEVQMIDEIFHEEAAAAYGVSPGKVAVMIHSGSR
GCGHQVCSDYLRIMDKAYRRYKINIPDRQLACAPVDSDEAMDYFQAMAAAANYAWANRQM
IVHWVRESFESVFGMSAEDMEMEIVYDVAHNIAKREVHTVKGRDTELFVHRKGATRAFGP
GRKEIPGEYRKIGQPVIIPGTMGTSSYLLHGTEVAMEETFGSTAHGAGRKMSRAGAKKTY
RGEEVQRKLESEGIYVRATSMPVVAEEAPGAYKDVDLVVRTAHETGISRLVARMLPLGVA
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggatataagggaagatctggttaaggtgagagaatccgtctgggaagttccaacttca
tacaagaagggaatgagggttcctggaagaatattcctgaaggatgaggccctcagggat
cttgagaagggtgcggttgatcaggtggcaaacgttgcatgcctcccagggatccagaag
ttctcaattggacttccagatatacacttcggatacgggttcagcatagggggtgtgggt
gcattcagcgcccgcacaggagtcataagcccggggggcgttggattcgacataaactgt
ggtgtccgcatggtcaggaccaatctggaccatgaggatgtgaggccaaagataaaggaa
ctcataaacaccctcttcaccaacgtgccatccggtgttgggagcaagggaaagataagg
ctcagacccggtgaaattgatgaggttcttgaaaacggcgccgaatgggctgttgaaaat
ggatacgggtgggatcaggaccttaaattcctggaggagaacgggaaaatggaggatgcc
agtgcagataaggtcagtgataaggccaaaaagaggggcataccccagctgggatccctt
ggatcaggtaaccacttcctcgaggtccagatgatagatgagatattccatgaggaggct
gccgccgcctacggtgtgagcccaggcaaggtcgccgttatgatacactcaggttcacgg
ggctgcggccaccaggtatgctcagactaccttaggatcatggacaaggcatacaggagg
tacaagataaacatacctgacaggcagcttgcctgcgcccctgtggactctgatgaggcc
atggattacttccaggccatggcagccgcagcaaactatgcctgggccaaccgtcagatg
atagtccactgggtgagggagtcctttgaaagtgtcttcggaatgagtgcagaggatatg
gagatggagatcgtctatgacgtggcacataacatagcaaagagggaggttcacactgta
aagggacgggatacagagctcttcgtccaccgtaagggagccacaagggcctttgggccg
ggcagaaaggagattcctggtgaatacagaaagatcggtcagccggtcataattccaggt
accatggggacatcctcctacctgctccacggaacagaggttgcaatggaggaaaccttc
ggttcgaccgcccacggggcagggagaaaaatgagccgtgccggtgcaaagaaaacctac
cgtggagaggaggttcagaggaaactcgaaagtgagggcatctatgtgcgggcaacatcc
atgccagtggttgcagaggaggcccccggtgcctacaaggatgttgacctggtggtcagg
acagcccacgagaccggcatatccaggcttgttgcaaggatgcttcctctgggagttgca
aagggatag
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