Methanothermobacter sp. KEPCO-1: FVF72_01855
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Entry
FVF72_01855 CDS
T06317
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
metk
Methanothermobacter sp. KEPCO-1
Pathway
metk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FVF72_01855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metk03019
]
FVF72_01855
Messenger RNA biogenesis [BR:
metk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FVF72_01855
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
DUF8065
Motif
Other DBs
NCBI-ProteinID:
QEF94012
LinkDB
All DBs
Position
complement(365530..366882)
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AA seq
450 aa
AA seq
DB search
MSVEVIAIGGYEEVGKNMSAVKVGDDVVIFDMGIHLDRVHIHEDTDIARMHSLDLIERGV
IPDDTLMKDVDGKVRAIVFTHGHLDHIGAVAKLAHRYQAPIIATPYTIALIERTIKAERK
FNVLNTLQVLNAGEKCQISPGITLEFIQSTHSIPQSVIAALHTPEGIIVYALDFKFDDHQ
KISPPPDYHRLRELGRKGVLAMIVETTRANEKQEVKTHSEKVARIVLEDIMKNPLEERNG
MIVTTFSSHMERIQAISDIASQSDRQMLLLGRSMERYCGLAEAMGILKLPENASIYGSPK
AVNRALARAEAKREDYLLITTGHQGEPDALLPRIANAKTQFRIKRGDNVVISAPVIPNPM
NVANRNLMERRLASSGARIYTNAHVSGHAGREDHRDFIRMLNPMHIIPAHGDLSMLSAYA
EIAEEEGYKLGNDIHILRNGQAQVFNGGIR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgtagaagtaatagcgatcggcggatacgaggaagtaggtaagaacatgtccgcc
gttaaggtgggggatgatgttgtaatatttgacatggggattcaccttgacagggttcac
atacatgaggacacagacattgcaaggatgcacagcctggacctcatagagaggggtgtc
atacccgatgataccctcatgaaggacgttgatggaaaggtcagggcaatagtgttcaca
cacgggcacctggaccacataggggcggttgcaaagctggcccacaggtaccaggccccc
ataatagcaacaccctacacaatagcactcatagagaggacaataaaggcagagcgaaag
ttcaatgtcctaaacacactccaggtcctcaatgcaggggagaagtgccagatatcccct
ggtataacactggagttcatacagtcaacccacagtataccacagtcagttatagcagca
ctccacacaccggagggtataatagtctatgcacttgacttcaaattcgatgaccaccag
aagatatcaccaccacctgactaccaccgcctcagggagcttggaaggaagggcgtcctg
gcaatgatagttgaaacaaccagggccaacgagaagcaggaggtcaagacacactcagag
aaggttgcaaggatagtccttgaggatataatgaagaacccccttgaggagaggaacggg
atgatagtgaccaccttctcctcccacatggagcgtatacaggccataagtgacatagca
tcacagagcgacaggcagatgctcctccttggaaggtcaatggagagatactgtggactc
gcagaggccatgggcatactcaaactccctgagaatgccagcatatatggaagtccaaag
gctgttaacagggcccttgcacgtgcagaggcaaagcgtgaggattacctcctcatcaca
acaggtcaccagggggaacccgatgctctgctgcctaggatagccaatgcaaagacccag
ttccggataaagaggggtgacaatgtggtgatatcagcccccgtcatacccaaccccatg
aacgttgcaaacaggaacctcatggagcgtcgcctggcatcaagcggtgcaaggatctac
acaaatgcacacgtatcagggcatgcaggtagggaggaccacagggacttcataaggatg
ctcaaccccatgcacataataccagcccacggagacctcagcatgctctcggcctacgcc
gagatagcagaggaggagggctacaagctgggtaacgacatacacatcttgaggaatgga
caggcacaggtatttaatggaggtatccgatga
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