KEGG   Methanothermobacter sp. KEPCO-1: FVF72_04985
Entry
FVF72_04985       CDS       T06317                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
metk  Methanothermobacter sp. KEPCO-1
Pathway
metk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:metk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FVF72_04985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:metk03019]
    FVF72_04985
Messenger RNA biogenesis [BR:metk03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     FVF72_04985
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     FVF72_04985
SSDB
Motif
Pfam: ECR1_N EXOSC1 A2L_zn_ribbon OB_RRP5_4th Zn_ribbon_TiaS HypA Zn_Tnp_IS91 DmmA-like_C Spt4 Defensin_5 OB_MEIOB_N
Other DBs
NCBI-ProteinID: QEF94565
UniProt: A0A5B9M4H7
LinkDB
Position
948048..948617
AA seq 189 aa
MKVKSGDIVFPGDFLAVSEEVLPSEGTYDDDGEIKSLVVGEVARDDRNKSIKVISKFSTP
PVLRTGSRVIGEVIDVRGQRALVRIHSIKGNRRALATYFVGGVHVSQAKKGYLSKLTEAF
RIGDIVEARVTKVMGLDGIDLQTSSRDLGVIKAMCTRCRHFMEMNGRDEVRCPNCENREK
RKLSANYEG
NT seq 570 nt   +upstreamnt  +downstreamnt
atgaaagttaaatctggggacatagtttttcccggagactttttagctgtaagtgaagag
gtactcccctcagaggggacctacgacgacgatggagaaataaagtcccttgttgttgga
gaggttgcaagggatgataggaataagagcataaaggtaatctcaaagttcagcacaccc
cccgtcctcaggacaggctcaagggttattggagaggtaatagatgtgaggggccagagg
gcccttgtgagaatacacagcatcaagggtaacaggagggcccttgcaacctactttgtt
gggggcgtccatgtttcacaggcaaagaagggctacctctctaaacttacagaggccttc
aggataggggatatagtggaggcaagggttacgaaggttatgggccttgatggtatagac
ctccagacctcatcccgtgaccttggtgtcataaaggccatgtgcacaaggtgcaggcac
ttcatggagatgaacggcagggacgaggtgaggtgtcccaactgtgaaaacagggaaaaa
aggaaactatcagcgaattatgaaggttaa

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