Methylomonas sp. LW13: U737_11255
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Entry
U737_11255 CDS
T05879
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
metl
Methylomonas sp. LW13
Pathway
metl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
metl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
U737_11255 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
metl03400
]
U737_11255 (recB)
Enzymes [BR:
metl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
U737_11255 (recB)
DNA repair and recombination proteins [BR:
metl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
U737_11255 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
ResIII
MinC_N
Motif
Other DBs
NCBI-ProteinID:
QBC27429
LinkDB
All DBs
Position
2490435..2494106
Genome browser
AA seq
1223 aa
AA seq
DB search
MTTAVPLNPLAFPLSGTRLIEASAGTGKTYTIAALYVRLILGHHPDSVEPSRYLLPPDIL
VVTFTEAATKELRERIRERLSQAARFFRQQLPTKDNFLQDIRAAYPEADWPACARRLELA
ANWMDEAAVYTIHSWCNRMLQQHAFDSGSLFRQEVNTDDTELLNEVVRDYWRSFYYDMSN
DADFASLYTLFKHPDELLLAVRSLLSNAEPIPSSLADGQPIKALIAAVASIRQTELQALK
APWLSWLPEVRDLLEAAIESKVLPAKNYNSTNRRNWLDKIEAWSLDPLQDTLDIGKGFEN
LSPAGMAQLANPGQIPPDHPGFAAIGRLPAQLAALPSLKVELIKHAVHWIRQRYDFEKQR
IARMTFDDMLIRLDNALQGRNRDRLAQVIREQYPIALIDEFQDTDPLQYRIFSTLYATPA
GGDFACLMIGDPKQAIYSFRGADIYTYLKAHRDTQGRHYTLGTNYRSTQALVDAVNQVFL
QADQQERGAFRFKTAQDNPLPFLPVKAQGRNETWVIDNQAAPALTLWHWDSEDAVGMPAY
RETLAEVTASQIVKLLNAADAGQTGFSSTSGMQALQPGDIAILVRSGTEATAIRNALARR
RLRSVYLSERDSIFASGEAVDMLLWLNALAEPRNERKVRAALSSATFAWSYQALHALALD
EPGWELHLERFLTYQQRWQRDGILPALRQLINDYGLHARLVDDSEGERSITNLLHLAELL
QRASTQLEGEQALIRYLAEAIEAGGSQAGDDGIIRLESDANLIKVVTIHKSKGLEYPLVF
LPFICSFREVGGRFNAYYRYHDENQDLQIDLHKQERIKAISDEERLQEDLRLLYVAMTRA
RHACWLGIAPVKSGSTKDCQLEKSAMGALLNWQAKMPISALAEQLIELKGSCGAISITPL
PEIDDARYSPVLVERGGFDARVPLGKISSNWWIASYSALHIADRLTPAEDSFQPLPEFET
AHDDKQNDEAEIAAALSKPLSGVHALPRGAGPGVLIHDLLEECAQRGFASVSANPALRQE
LIQKRFVGGEWENKHAVIGSALSHWLNMPLLEDANVSLAALEANAYQAELEFLLGADTVD
TEELDRLVSRHTFGGQARPGLLPGQVNGLLKGFIDLVFVHDQQYYVVDYKFNSLGADDAA
YTQEALTAAMLAKRYDLQCSLYLLALHRLLKVRLGNVYDYETHIGGGLYLFLRGAQGPRV
GCVFDKPPRALIERLDALFGASS
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgctgtcccactcaaccccctcgcatttccgttatcgggtacgcggctgatc
gaagccagcgccggcaccggtaagacttacaccatcgcagccttatatgtgcgcttaatt
ctgggacaccatcctgatagcgtcgaacccagccggtatctattgccgccggatattttg
gtggtgaccttcaccgaggccgccaccaaggaactgcgggaacggatacgcgagcgcttg
agccaggccgcacggttttttcgtcagcaattgccgacgaaggataacttcttacaagac
atccgcgccgcttatcccgaagcagactggccggcctgtgcccgccgcttggagttggcg
gccaactggatggacgaggcggcggtttataccatccacagttggtgtaaccgcatgttg
caacaacatgcttttgatagcggcagtttgtttcggcaggaggtcaataccgacgacacc
gaattgttgaatgaagtggtgcgggattattggcgcagtttctattacgacatgtccaac
gatgccgattttgctagcctgtatacgttgttcaagcatccggacgaattactgctggcg
gtgcgttcgctgctgagcaacgccgagccgataccgtctagcttggccgacggtcagccc
atcaaggccttgattgccgcagtggcgtccattcggcagactgaactacaggctttaaaa
gcgccttggctaagttggctgccggaagtgcgcgacctattggaggcggctatcgaaagc
aaagtgctgccggcaaaaaattacaattctactaaccgccgcaactggctggacaaaatc
gaggcatggagtttggatcctttgcaagacacgctggacatcggcaagggttttgagaat
ctgtcgccggccggcatggcgcaattagccaaccccgggcaaatcccgccggatcatccg
ggtttcgcggcgattggtcgcttgcccgcgcaactggcggcactgccgagtttaaaagtc
gagctgatcaaacacgccgtgcactggataaggcagcgttacgattttgaaaaacagcgc
atcgccaggatgaccttcgacgacatgctgattcgtttggataacgcgctgcaaggccgc
aatcgcgacaggctagcgcaggtgattcgcgagcagtatccgattgctttgatcgacgag
tttcaggataccgacccgctgcaataccggattttttccacgctctacgccacgccagcc
ggcggagattttgcgtgtttgatgatcggcgacccgaaacaagctatctactcgttccgc
ggcgcggatatttacacttatcttaaagctcaccgcgacacccaaggccggcattacacc
ctgggcaccaattaccgttccacccaggctttagtcgatgcggtgaatcaggtgtttttg
caagccgatcagcaagaacggggcgcattccgctttaaaacagcacaagataatccgtta
ccttttctgccggtcaaggcccaaggccgcaatgaaacctgggttatcgataatcaagct
gctccggcgctgaccctgtggcattgggatagtgaggacgcagtcggcatgccggcttat
cgggaaacactggcggaggtgactgccagccagattgtcaaattgttgaacgcggctgat
gcggggcagaccgggtttagctcgacatccggcatgcaggctttgcagcctggggacatc
gccatcctcgttcgcagcggcaccgaagcaacggcgatacgcaacgccttggcgcgccga
cgcttgcgcagtgtctatctgtccgaacgcgattccatctttgccagcggcgaagcggtc
gacatgttgctttggttaaatgccctggctgagccgcgtaatgagcgcaaagtgcgtgcg
gccttaagttcggcgaccttcgcttggtcttaccaagcgctgcacgcactggccttggac
gaacccggctgggaattgcatctggaacgctttctgacgtatcaacaacgctggcaacgc
gacggcattttgcccgcgctgcggcaattgattaacgattacggcttacacgcccgcctg
gttgacgacagcgaaggcgaacgctccatcaccaatctgctgcatctggccgaattgtta
caacgcgccagcacgcagttggaaggcgagcaagccctgatcaggtatttggctgaggcg
atagaggcgggcggtagccaagccggcgatgacggtatcatcaggctggagagcgatgcc
aatctgattaaagtcgtcacgattcataaatccaagggcctggaatatccgctggtgttt
ttgccgtttatttgcagctttcgggaagtcggcggccgcttcaatgcctattatcgttat
cacgacgaaaaccaagatttacaaatcgacttgcataaacaagaacgcattaaagccatc
agcgacgaagagcggttgcaggaagatttgcgtttgctgtatgtagcaatgacccgagct
cggcatgcttgttggttgggtattgcgccggtcaaatccggcagtaccaaggattgccag
ttggaaaaatcggccatgggcgccttgcttaactggcaggccaaaatgcccatcagcgcc
ttagcggagcaattaattgaactgaaaggcagctgtggcgcgatttcgataacgccctta
ccggaaattgacgacgcgcgctatagcccggtcttggttgaaaggggtggctttgatgcg
cgcgtgccgctcggcaaaatatccagtaattggtggatagccagttatagcgctttgcac
atcgcggatcgcctgacgcctgcggaagattcgtttcagcccttgccggagtttgaaacc
gcccacgacgataagcaaaacgacgaagccgaaattgctgctgcgctcagtaagccattg
tccggtgtccacgctttgcccagaggcgccggtcccggcgtgttgattcacgatctgctg
gaggagtgcgcgcaacgcggttttgccagcgtctcggcaaatccagccttaagacaagaa
ttgattcaaaaacgatttgtcggaggcgaatgggagaacaaacatgccgtcatcggttcc
gccttgtcgcactggttgaacatgcccttgctggaggacgccaatgttagtttggctgcg
ttagaagctaatgcctatcaagccgagctggaatttctgctgggcgccgataccgtggac
actgaggaactggatcgcttagtcagccgccacaccttcggcggacaagcccgcccgggc
ttactgcccggccaagtaaacgggctgttaaaaggttttatcgacttggtgttcgtgcat
gatcagcagtactacgtggtcgattataaattcaacagtttgggtgccgacgatgcggcg
tatacgcaggaagccctgactgcggcgatgttagctaaacgttacgatctgcaatgcagc
ttgtatttattggccttgcatcgtttgctgaaagtcaggctgggcaatgtttacgactac
gagacgcacatcggtggggggctgtatttgtttttaagaggcgcgcaagggccaagggta
gggtgtgttttcgataaaccacccagggccttgatcgagcgcttggatgccttgtttgga
gcatcatcatga
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integrated database retrieval system
