Methylomonas sp. LW13: U737_13795
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Entry
U737_13795 CDS
T05879
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
metl
Methylomonas sp. LW13
Pathway
metl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U737_13795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metl03019
]
U737_13795
03009 Ribosome biogenesis [BR:
metl03009
]
U737_13795
Enzymes [BR:
metl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U737_13795
Messenger RNA biogenesis [BR:
metl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U737_13795
Ribosome biogenesis [BR:
metl03009
]
Prokaryotic type
rRNA helicases
U737_13795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
GMT-wHTH
Motif
Other DBs
NCBI-ProteinID:
QBC27885
LinkDB
All DBs
Position
3019207..3020955
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AA seq
582 aa
AA seq
DB search
MSDTPSSATPSFKDLSLSDPILKALESVGYETPSPIQAQIIPFVMAGRDVLGQAQTGTGK
TAAFALPILSRINLNQKDPQALVLAPTRELAIQVAEAFQSYAAHIKGFHVLPIYGGQDYT
SQLRQLSRGAHVVVGTPGRVMDHMRRGTLKLDQLTTLVLDEADEMLRMGFIDDVEWILEQ
TPSTRQTALFSATMPTEIRKIAQKYLNNPEQVTIKVKTATAANIRQRYWFVSGVHKMDAL
TRILEAENFDGMIIFVRTKTATIEVAEKLEARGFSASAINGDMSQALRERAIDNLKSGKL
DILIATDVAARGLDVDRITHVVNYDIPYDTESYIHRIGRTGRAGRTGDAILFVSPREKRL
LANIEQATKQKVEEMQLPSTDFINNARINRFKQRITDTLAGEELSFYNQLINQYQVEHNV
PALDIAAALAKLLQGDTPLLMKEPSKKPRKDADEKGRSDRNDRNDRGPRREKGRVGAVEM
ETFRIEVGHADGVKPGNIVGAIANETGIDGDHIARIKIEEHYSTVELPAGMPKDLFQALK
KVRVVGKPLDISKFDPALVKKDKSKKRVGSPSRRGKNKDQAE
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaccccctcctccgccacgccttcctttaaagatttatcgctttcagaccct
attttaaaagcgctggaaagtgtcggttacgaaacgccttctccgattcaagcacagatt
attccgttcgtgatggctggtcgcgatgtattgggccaagcgcaaaccggtaccggcaaa
accgccgcattcgccttaccgattttgtcccgcattaacctcaatcaaaaagacccgcaa
gctttggtgctagccccgacgcgcgagttggcgatacaggttgccgaggcgtttcaaagt
tatgccgcacatatcaaaggctttcacgtattaccgatctacggcggccaggattacacc
agccagttgcgccaattgagtcgcggcgcgcatgtcgtggtcggtacaccgggacgggtc
atggaccacatgcgtcgcggcacgctgaaactagaccaactgactactttggtattggac
gaagccgacgaaatgttgcggatgggtttcatcgacgatgtggaatggattctggagcaa
accccatcgacgcgccaaactgcactgttctcggcaaccatgccgactgaaattcgcaaa
atcgcgcagaaatacctgaacaaccccgaacaagtgactatcaaggtcaaaaccgccact
gccgccaatattcgccaacgctattggtttgtcagtggcgtgcacaaaatggatgccctg
acccggattctggaagcggaaaacttcgacggcatgattatcttcgtcagaaccaaaacc
gccaccatcgaagtagccgaaaaattggaagcgcgcggtttttccgcctctgcgatcaac
ggcgacatgtcgcaagccttgcgcgaacgcgctatcgacaatctaaaaagcggcaaactg
gatattctgatcgccacggacgtcgccgctcgcggcctggacgttgatcgtattacccac
gtcgtcaactatgacatcccttacgacaccgaatcttatatccatcgtatcggccgtacc
ggtcgtgccggccgcaccggcgacgcgattttgtttgtctcgccgcgcgaaaaacgcctg
ctggccaatatcgagcaagctacgaaacaaaaagtcgaagaaatgcaattgccttccacc
gactttatcaacaacgcccgcatcaaccgtttcaaacagcggattaccgatacgctggcc
ggcgaggaactcagcttttacaaccaattaatcaaccaatatcaggttgagcataatgtc
ccggcacttgacattgcagcggcgttagccaagttattgcaaggcgatacgcctttgttg
atgaaagaacccagcaaaaaaccacgcaaagacgccgatgaaaaaggccgttccgaccgc
aatgatcgtaacgaccgcggcccaagaagggaaaaaggtcgcgtcggcgcggtagaaatg
gaaaccttccgcatcgaagtaggccatgccgacggcgtgaaaccaggcaatatcgtcggg
gctatcgccaacgaaaccggtatagacggcgatcacattgcccgcatcaaaatcgaggag
cactacagcaccgtagagctgcccgcaggcatgcccaaagacttattccaggccctgaaa
aaagtccgggtagtcggtaaacctttggatatatccaaattcgacccggctttggtgaaa
aaagacaaaagtaaaaagcgggtcggctcaccatcaagacgcggcaaaaataaagaccaa
gccgaataa
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