Methylomonas sp. LW13: U737_15195
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Entry
U737_15195 CDS
T05879
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
metl
Methylomonas sp. LW13
Pathway
metl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U737_15195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metl03019
]
U737_15195
03400 DNA repair and recombination proteins [BR:
metl03400
]
U737_15195
Enzymes [BR:
metl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U737_15195
Messenger RNA biogenesis [BR:
metl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U737_15195
DNA repair and recombination proteins [BR:
metl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U737_15195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QBC28134
LinkDB
All DBs
Position
complement(3347347..3349914)
Genome browser
AA seq
855 aa
AA seq
DB search
MDFDFSKLQEILLEWPSLQISELTANDSLMDRILQILKEFGCTEVLQKSDLQPLIRHILL
RESSNSGCEKNLRVPADSAWPSEADWTSHGVSVMRVGCANSFLLSVALWNPTWLDGGNVG
VFTDAFSNKTVREDGRCLADPFITDVTGYEYYSSPGQREAIRGAFLIPPGDTLIVNLPTG
SGKSLVGQAPALVHYQDGHLTLFVVPTVALAIDQARQMEQYFLRSKQINQAWPLAWYGAM
PEIDRSEIRHRMLEGTQRILFTSPEALTTSLLRTVFEVAQNGMLRYIVIDEAHLITQWGD
EFRPEFQVLAGLRNSLLRKLNEAKLPPFRTLLLSATFTPETIDTLANLFGPPERVQMIAA
VHLRPEPQYWFYKAQSRVEKQERILEALRHAPRPFILYVTTREDATLWYRILKNAGLKRI
QRFDGGTHGQERKRIIDGWISNKLDGIVATSAFGVGIDKADVRTILHATIPETLDRFYQE
VGRGGRDGMPSVSLLVYEDTDWVLTENMANPRLISNELGMARWRALYESRKNYTNHGELI
RIDLRALRQGMSSGFGENLKWNMRTLMLMARAGFLELDVEPNSMQSAENDTDSYTSAITD
LAVMRIRLFRNDHCLESVWEDVISNSRQKTLNAGIRNLKLMQSLLNGEKEVSEILKDLYR
NNSVSWPVSVTQVCGGCPVDRFRDNRKDQYHVPIAVPIYNLSPLDLSTWQSTFPHLDPTF
LAVFYEPGTPLSSFVSLVKWLVIECNVKELSVDQSSDLAKLADWRKLYRHARSGIVINRE
LGQLDEEPYSPLARVTVFDERITSQQINKLLFMQRPAHWVFYPSNTADPNYPHRLIADTA
TNSARLEQLLAVIKQ
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgatttttccaagttacaagaaattcttttagagtggccgtcactccaaatt
tcagaattgaccgctaacgactccctcatggatcgaatccttcagatcctgaaagagttt
gggtgtacggaagttttacaaaagtccgatcttcagccattaattcggcatattttgctt
agagaatctagtaactcgggatgtgagaagaacctacgtgtccctgcagattcagcttgg
ccttcagaagcggactggacttcgcacggggtttcagtcatgagagttggatgtgcaaat
tctttcttactctctgtagcattatggaatccaacttggctggatggtgggaacgttgga
gtgtttactgatgcattttcgaacaaaactgtcagggaagatggacgttgcctagctgat
ccttttatcactgatgtgacgggatatgagtattactcaagtcctgggcaacgggaagca
attcgtggagcatttttgattcctcctggtgacactttaatcgtcaatttgcctacgggg
tctggaaagagtttagttggacaggcacctgctttggttcattatcaagatgggcactta
accttatttgtagtaccgacagttgcccttgctatcgatcaagcaaggcaaatggaacaa
tattttttgagatctaaacaaataaaccaagcatggcctttagcatggtatggggccatg
ccggaaattgatcgctctgagattcgccaccgtatgctcgaggggacgcaaagaatatta
tttacctcgccggaggcgttaacgacatcgctgctaagaacggtttttgaagtagcccaa
aatggtatgcttcgttatattgttatagatgaggctcatttgattacacagtggggcgat
gaattccgtcccgaattccaagtattagcaggcttacgcaatagtctgcttcgaaaacta
aatgaagcaaaacttccgccttttcgtaccttactgctaagcgccacattcactccagaa
accatagatacgctagcaaatctttttggtcctcctgaaagagttcaaatgattgccgca
gtgcatttacgtcctgaaccgcaatattggttctataaagcgcaatctcgagtcgaaaaa
caagaacgcattttagaagccttaagacatgcgccacgtccgtttattctttatgtgact
actcgagaagacgcgaccttgtggtaccggatcttaaaaaatgctgggttaaagaggatt
caaaggtttgatggtggcacacatggccaggagcgcaaaaggatcattgatggttggatc
agcaataaactagacggcattgttgccacatccgcttttggcgttggtatcgataaagcg
gatgttcgtaccattcttcatgcgacgatacccgaaacattagaccgtttttatcaggag
gtcgggcgtggcggacgtgacggcatgccttcggttagcttactggtttatgaagataca
gactgggtattaaccgagaacatggcaaaccctagacttatttcaaatgaattgggtatg
gcccgttggcgcgcactgtacgaaagcagaaaaaattacacaaaccatggcgagcttatt
aggatagatcttagagcattaagacagggaatgagcagcggttttggagagaacctgaag
tggaatatgcggaccctaatgcttatggcgcgtgccggttttctggagcttgatgtcgag
ccaaacagtatgcaaagcgcggaaaatgatactgactcctatacatctgcaataactgat
cttgcggtcatgcgaattcgcctttttcgaaatgatcattgtttggaaagcgtatgggaa
gatgttatttcaaactctcgtcagaaaaccttaaatgcaggtataagaaaccttaagtta
atgcaatctcttctcaatggagaaaaggaagtttctgaaattctcaaggacttgtatcgt
aataattccgtgagttggccagttagtgtgactcaagtttgtggtggttgtcccgttgat
cgtttcagggataacaggaaagaccaatatcacgttccgattgctgtacccatctacaat
ctatccccgcttgatttgtcaacctggcaatcaacattcccacaccttgatcctacattt
cttgcagtgttctacgaaccaggaactccactgtcttcctttgtgagcttagttaaatgg
ttggtcattgaatgcaacgttaaggaacttagtgtggatcaatcctccgatcttgccaaa
cttgcggattggaggaaattatatcggcatgcgcggagtggaatagtgattaatcgcgaa
cttggacaattggatgaagaaccttactcgcctttggcaagagtgactgtttttgatgaa
cgcataacatcacaacaaataaataaattattgtttatgcaacgcccagcgcactgggta
ttttatccgtcaaacacagcagacccaaactatccacatcgtttaatcgccgatacagcg
acaaactcagcacgactcgaacaactacttgcagtaattaaacaatga
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