Methylomonas sp. LW13: U737_15580
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Entry
U737_15580 CDS
T05879
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
metl
Methylomonas sp. LW13
Pathway
metl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U737_15580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metl03019
]
U737_15580
03016 Transfer RNA biogenesis [BR:
metl03016
]
U737_15580
Enzymes [BR:
metl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
U737_15580
Messenger RNA biogenesis [BR:
metl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U737_15580
Transfer RNA biogenesis [BR:
metl03016
]
Prokaryotic type
tRNA degradation factors
U737_15580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
QBC28201
LinkDB
All DBs
Position
complement(3419878..3422202)
Genome browser
AA seq
774 aa
AA seq
DB search
MTANTDQTSDFNALVDPHAQREAEKYENPIPSRELILQLIQEAGKPLRRQQIAQQFALET
PDALEALRRRLRAMERDGQLSFNSRQKYCLGSGGNTIAGRVLGHPEGFGFLKPDDGSEDL
FLSPREMKPLMPNDRVIARVAGIDRRGRREAAVIEISERNTHQVVGRFFTEGRVAYVVPD
NKKIAHEVLIAKEDVGHAKQGQIVVAEIIQQPSQHCQPLGRIIEVLGAHMAPGMEIEMAI
RSHDLPNQWPDQLLEEIKELTPQVPESAKQGREDIRKLPLVTIDGEDARDFDDAVYAQKT
PKGWKLLVAIADVSHYVKVDTALDAEAKNRSTSVYFPEKVIPMLPEILSNGLCSLNPEVD
RLCMVCELLINEEGNVLRSRFFEAVMRSHARLTYTDVAKMLVDGDQKLAKKHAALLPHLQ
TLYDLYKVMRKQRELRGAMDFDTQETKIVFGPERKIAEIVPLQRNDAHKLIEEFMITANT
AAAKFLNKKKMPRLLRIHDGPGPEKLLALKTFLGELGLFLGGKAQPTPLDYMHLLESVKE
RPDAHLIQTILLRSMSQAVYSPETKGHFGLALDAYAHFTSPIRRYPDLLVHRAIRHCLAG
KSVDSFYYTHPDMVLLGEHCSANERRADDATRDVVSWLKCEYMMDKIGEEFDGVISAVTG
FGFFVELQSIYVEGLVHIASLVQDYFAFDASKHQLYGERTGVRYRLGDMVKIRVVRVNLD
DKKIDFELLQSGKKIAKTKSSSGRKKAEASAKATKSNKDKKSSSKPKAKKRRRS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaataccgatcagacatctgattttaacgccctcgtcgatccgcacgcccag
cgtgaggccgaaaaatacgagaatcccatccccagtcgcgagctgattctccagcttatt
caagaagccggcaagccgctacgccgccaacaaatcgcccaacaatttgccctggaaaca
cctgatgccctggaggcgctgcgccgcaggctgcgcgccatggagcgcgacggccagcta
agttttaacagccggcaaaaatattgcttgggctccggcggcaacactatcgccggacgg
gtgcttggccatccggaaggcttcggtttcttgaaacccgatgacggtagcgaagacctg
tttttgtcgccgcgggaaatgaagccgctgatgcctaatgaccgagtcatcgcgcgcgtg
gccggcattgatagacgcggccgtcgcgaagcggcagtgattgaaatcagcgaacgcaat
acgcatcaagtggtcggtcggttttttaccgagggccgcgtggcttatgtggtgccggat
aacaaaaagattgcccacgaagtactgattgccaaggaagacgtcggccatgccaaacaa
ggccagatcgtggtcgcagagataattcagcaacctagccagcattgccagcccttgggc
cgcatcatcgaagtactgggcgcgcatatggcgccgggcatggaaatcgaaatggcgatt
cgctctcacgatttgcccaatcagtggccggaccagttactggaagaaatcaaggaactc
acgccgcaagtgcccgagtccgccaagcagggcagggaagatattcgcaagttgcccttg
gtcaccatagacggcgaagatgcccgggatttcgacgatgctgtctacgcgcaaaaaacc
ccgaaaggctggaaattattggtagcgattgccgacgtctcacattatgtaaaagtcgat
acggccttggatgccgaagccaaaaaccgcagtacttctgtatattttccggaaaaagtc
attccgatgctgccggagatactgtctaacggattgtgttcgttgaacccggaagtggat
cgtttatgcatggtctgcgaattactgatcaacgaagaaggtaatgtcctgcgttcccgg
ttttttgaagctgtgatgcgctcccatgcgcgtttgacctataccgacgtagcaaaaatg
ctggtggatggcgatcagaagttggcaaaaaaacacgccgctttgctgccacatttacag
actctgtacgacttgtacaaggtgatgcgtaagcagcgcgagttgcgcggggcgatggat
ttcgacacccaggagaccaaaatcgtctttgggccggagcgcaaaatcgctgaaatcgtg
cctttgcagcgcaacgatgcccataagctgatcgaagaatttatgattaccgccaacacg
gcagcggcgaagtttctgaacaagaaaaaaatgccgcgcctgctgcggatccacgatggc
cccggcccggaaaaattactggcactgaaaacctttctaggcgaactgggtttatttctg
ggtggtaaggctcaacccacgccattggattacatgcatctgctggagtcggtaaaggaa
cgtcccgacgcgcatttgattcagacgattttgctgcgctccatgtcgcaagccgtttac
agcccggaaaccaaaggccattttggcttggcgctggatgcctatgcgcactttacttcg
ccgatccggcgctatcctgatttgctggtgcatagggcgatcaggcattgtctggccggt
aagtcggttgatagtttttattacacgcatcctgacatggtgttgttgggtgagcattgt
tcggcgaacgagcgccgagccgacgacgccacccgcgatgtggtgagctggctgaaatgc
gaatacatgatggacaagatcggcgaagagttcgacggcgtgatttccgccgtgaccggt
tttggctttttcgttgaattgcaatcgatttacgtggaaggcttggtgcatatcgcctcc
ctggtacaggattattttgccttcgacgccagtaaacatcagttgtacggcgagcgtacc
ggcgtacgttaccgcttgggcgatatggtgaaaattcgcgtggtgcgggttaatctggac
gacaagaaaatcgattttgagttgctacaatcaggtaaaaaaatcgctaagaccaaatcc
tcttcgggccgcaaaaaagccgaagccagcgctaaagcgacgaagtcgaataaagataaa
aaatcctcaagtaagccaaaagccaaaaaacgccgtcgctcatga
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