Methylomonas sp. LW13: U737_17390
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Entry
U737_17390 CDS
T05879
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
metl
Methylomonas sp. LW13
Brite
KEGG Orthology (KO) [BR:
metl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metl03016
]
U737_17390 (rnd)
Enzymes [BR:
metl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
U737_17390 (rnd)
Transfer RNA biogenesis [BR:
metl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
U737_17390 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QBC28537
LinkDB
All DBs
Position
complement(3837630..3838778)
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AA seq
382 aa
AA seq
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MTIQYINRPDQLDSLCQLISQEPWIALDTEFLREKTYYPKFCLLQIAAPGWVACVDPLAI
ANLTPLLEAIYNPNIVKVLHSCRQDLEIFYQITGKIPGPIFDTQIAAPLLGFQENPGYAM
LVSSFLNVNLSKAHTRTDWSERPLSQDQIQYAADDVIYLCKIYKIMCEQLDKLGRANWLE
SDFALLNDPELYQLSPENAWLKIRGKNKLTGKQLSIMQSLTEWRERTAQQENKPRSWLLQ
DDLLLELGKLQPVTLADLAKIRNINDRTVNRYGKTICELIDSAKQRPPKPLAEKDQAGKK
TQQHEAILDVLSAVVRIRAEENSLNPIILATRKDLEQLLSGDEDCLLLHGWRYNMAGREL
QGLLRGDLTLSLKPDGVVISAV
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgactattcaatatatcaaccgcccggatcaactcgatagcctttgccaactgatcagc
caggagccctggatcgccctggataccgaatttcttcgcgagaaaacctattaccccaag
ttttgtttactgcaaatagccgcgccgggctgggtggcttgtgtcgatccgttagcgatt
gccaatttaacgccgctgttagaggcgatttacaatcccaatattgtcaaagtgttgcat
tcctgccggcaggatctggaaattttttaccagattaccggcaaaattccgggcccgatt
ttcgatacgcagattgccgcgccgctgctgggttttcaggaaaatccgggttatgcgatg
ctggtatccagctttttaaacgtcaatctcagcaaggcgcatactcgtaccgactggtcg
gagcggcccttgagccaggaccaaattcagtatgccgccgacgatgtgatttacctgtgc
aagatttacaaaatcatgtgcgagcaattggataagttagggcgtgcaaattggctggag
agtgattttgcgctgttgaacgatccggagctgtaccaactctcgccggaaaatgcctgg
ttgaagattcgtggcaaaaacaagctgaccggtaagcaattgtctatcatgcaaagcctt
accgaatggcgcgaacgtaccgcccagcaagaaaacaaaccgcgcagttggttgttgcag
gatgatttgctgctggaactgggcaaattacaacccgtgacattggccgatctagccaag
atccgcaacatcaacgaccgtaccgtcaatcgttacggcaaaacgatttgcgaattgatc
gacagtgccaaacaacgtccgcccaaacccttggccgaaaaggatcaagctggcaagaaa
acccaacagcacgaagcgatactggatgtactcagcgcggtggtcagaatccgtgctgag
gaaaactcgctgaatcccatcatcttggctacccgcaaggatttggagcaattactgtcc
ggcgatgaggattgcttgttgttgcacggctggcgttacaacatggccggccgggagttg
cagggcttattgcgcggtgacttaaccttgagcttgaagccggatggtgtggtgattagt
gcggtttag
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