Methylomonas sp. LW13: U737_17730
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Entry
U737_17730 CDS
T05879
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
metl
Methylomonas sp. LW13
Pathway
metl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U737_17730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metl03019
]
U737_17730
Enzymes [BR:
metl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U737_17730
Messenger RNA biogenesis [BR:
metl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U737_17730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_25
CMS1
AAA_19
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QBC28602
LinkDB
All DBs
Position
complement(3913577..3914863)
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AA seq
428 aa
AA seq
DB search
MLFSELGLSEQLLKAVAEQGYETPTPIQAQAIPVILQGRDVLAGAQTGTGKTAGFTLPLL
QLLQGQPVPQKPRPVRVLILTPTRELAMQVYESVRTYGKHLPFFAEAIFGGVSINPQIQK
IQRGTDIVVATPGRLLDLIQQQHLDLSKVEHFVLDEADRMLDMGFIRDIRRIIALLPSKR
QNLLFSATYAPEISALAEQILTDPVEIAVAKRNAAADTVSQLVYGISREYKRELLSYLIG
NGHWQQVLVFVRTKHGADRLAKQLIKDGIRCAALHGDKSQGARVRALEDFKNGSITALIA
TDIAARGLDIDQLPHVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLVDPEEAYLLAAVE
KLLKRQIPRVDDTGYPSVSLAVTNSKPQPKPAQPNKPATRRPQNGRPGESTKRAPNSRKP
RPQTAKPR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgttattttcagaattgggtttgtccgagcaactacttaaggcggttgccgaacaaggc
tatgaaaccccgacgccgattcaggcgcaggccattccggtcattttgcaaggccgcgat
gtgttggccggcgcgcaaaccggcaccggcaaaaccgccgggttcaccttgcctttgcta
cagttgctgcaaggacaaccggttccgcaaaagccgcgtccggttcgggtattgatttta
acgccaacccgcgaattggcgatgcaagtctatgaaagcgtcagaacctacggcaagcat
ttacctttttttgccgaggcgatatttggcggcgttagtattaatccgcagattcagaag
atccagcgcggcaccgatattgtcgttgctacgcccggccgtttgctggatttgattcag
caacaacatctggatttgtcgaaggtcgagcattttgtactcgacgaagccgaccgaatg
ctggatatgggttttatccgcgacattcgtcgaatcatcgcgttgttgccgagtaaacgc
cagaacctgctgttttcggcgacctatgctccggaaatcagcgcgctggcggaacaaatt
ctcaccgatccggttgaaatcgctgtcgccaaacgcaatgccgccgccgataccgtctcg
caattggtttatggcattagccgcgaatacaagcgcgaattgctgtcctacctgataggc
aacggccattggcagcaggtattggtgttcgttcgcaccaagcacggcgcggatcgtttg
gccaagcagttgatcaaggatggtatccgttgcgcggccttgcacggtgataaaagccag
ggggccagggtgagggcgcttgaagattttaaaaacggttcgattaccgcattgattgcc
accgacattgccgcgcgcggcctggacattgatcaattaccgcatgtggtgaatttcgat
ttgccgcaagtagctgaagattacgtacaccgcatcggccgtactggccgtgccggcgcc
gagggtcaggcaatttcgctagtcgatccggaagaggcttatttgctcgccgccgtcgag
aaactgttgaaaaggcagattccgcgagtcgacgataccggctatcccagcgtgtcattg
gccgtgaccaatagcaagccacagccgaaaccggctcagccgaacaagccagcaaccagg
cggccgcaaaatggccggcctggggagtcgactaaacgagcgccgaattcgcgcaaaccg
cgtccgcaaactgccaagccccgttaa
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