Methylomonas sp. LW13: U737_21825
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Entry
U737_21825 CDS
T05879
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
metl
Methylomonas sp. LW13
Pathway
metl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
metl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
U737_21825 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metl03021
]
U737_21825 (rpoD)
Transcription machinery [BR:
metl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
U737_21825 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
V-SNARE_C
HTH_20
Motif
Other DBs
NCBI-ProteinID:
QBC29339
LinkDB
All DBs
Position
complement(4764553..4766364)
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AA seq
603 aa
AA seq
DB search
MNQEQQQSQLKQLIAKGKAQGYLTYAEVNDHLPSDIIDPEQIDDIIGMINDMGIQVYEVA
PDDDDSLITSDAVVTADDDEEVAEVAALASVDSEFGRTTDPVRLYMREMGSVELLTREEE
LKIAKRIEEGQRQVVGAIARSGFIVETFIEAFDSVQVEDSGVRLNDLVLGFVDLTEVEDI
DVSGIEIEEPAEDAEEESKTVDYEEVKQKVELLRKALKAATTSVKKHGYGHEKTEKLFDA
IDEIFCEFKWTPQYLKKMVSISEELISAIREEERFILDVCVKKAKMPRKDFINAFAENEA
NLEWLDQFIAARPNFSEVFSSHRENIRAAQQRLADIESRYGLSIAVLKSICRSISLGEAK
ARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA
TWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQILQELGREATPEELAERMEMPE
DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSKMLSPVESATIAGLRESTQNVLAGL
TAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRCFL
DGE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaacaacagcaatcccaactgaaacaactgatagcaaaaggtaaggcgcag
ggttatttgacttatgcggaagtcaacgaccatttgcctagcgatattatcgatcccgag
caaatcgacgatattatcggcatgatcaatgatatggggattcaggtttatgaggtggcg
ccggatgacgatgactcgctgataacctcagatgccgtcgttactgcagatgacgacgag
gaagtggctgaagtcgcagccttggcgtctgtcgatagcgagttcggccgaaccaccgat
cccgtgcgcttatatatgcgtgaaatgggttcggttgagttattgactcgcgaggaagaa
ttaaaaattgcgaaacggattgaggaagggcaacgccaagtagtgggggccattgcccga
tccgggtttattgtcgagacttttatcgaagcatttgattccgttcaggttgaagactcc
ggcgtacgactcaacgatttggtgttgggttttgtcgatctcactgaggttgaggatatt
gacgtcagcggtatcgagattgaagagcctgctgaggatgctgaagaagagagcaaaacc
gttgattacgaagaggttaagcaaaaagtcgagttgctcagaaaagctttaaaagccgcg
acgacctcagttaaaaaacatggttacggccatgaaaaaaccgaaaaactgtttgatgcg
atagacgaaatattttgcgagtttaaatggacgccgcagtatttgaaaaaaatggtatcc
atttctgaagagttgatttcagctattcgcgaagaagagcgtttcatactggatgtttgc
gtcaagaaagcaaaaatgccgcgtaaggactttatcaatgcgtttgccgagaatgaggct
aaccttgagtggttggatcaatttatcgctgcgaggcctaatttttctgaggttttcagt
agtcaccgtgagaatattagggctgcacagcagcgattggccgatatcgagtctcgctac
ggtctgagcattgcggttctgaaaagtatttgtcgtagtatctctctaggggaagctaag
gcgagacgtgctaaaaaggaaatgatcgaagccaatttgcgcttggttatttctattgcc
aaaaaatacaccaatcgcggcctgcagtttctggatttgattcaggaaggcaatattggt
ctgatgaaggctgtcgataaatttgaatatcgacgcggttacaaattttctacctacgca
acatggtggatccgtcaggcgattacccgttccatcgctgatcaggccagaactattcgt
attccggtacacatgatcgaaaccattaacaagctgaatcgcgtctccagacagattttg
caggagctgggtcgcgaggctacgccggaagaattggctgagcgcatggaaatgcccgag
gacaaaattcgtaaagtgttgaagattgccaaagagccgatttcaatggaaacaccgatt
ggtgacgatgaagattcgcatttgggtgattttattgaagattccaagatgctttcgccg
gtagagtctgctacaatcgccggccttcgcgagtccactcaaaatgtattggcgggctta
acagctagagaggccaaggtgctccggatgcgtttcggtatcaacatgaacaccgaccat
acactggaagaggttggtaaacagtttgacgtgacccgtgagcggattcgtcagatcgaa
gcaaaagcgctgcgcaaattaaggcatccttccagatcagagcagttgagatgttttctt
gacggcgagtaa
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