Methanosarcina sp. MTP4: MSMTP_0614
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Entry
MSMTP_0614 CDS
T03850
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
metm
Methanosarcina sp. MTP4
Pathway
metm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMTP_0614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metm03019
]
MSMTP_0614
03009 Ribosome biogenesis [BR:
metm03009
]
MSMTP_0614
Enzymes [BR:
metm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSMTP_0614
Messenger RNA biogenesis [BR:
metm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSMTP_0614
Ribosome biogenesis [BR:
metm03009
]
Prokaryotic type
rRNA helicases
MSMTP_0614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
P-loop_SecA
ArsR
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKB24083
UniProt:
A0A0E3L0Q7
LinkDB
All DBs
Position
complement(726621..728354)
Genome browser
AA seq
577 aa
AA seq
DB search
MEKLAKFKELGLSESTLKALQKKGFEEPTPIQEKIIPLFLGGECDIIGQAQTGTGKTAAF
GAPIIEKIPEKTGKVQAIILTPTRELAIQVSEELNSLKGGKNLQIIPIYGGQSMTRQLRM
LKSGVDIVVGTPGRVIDHIQRKSLKLDNISYFVLDEADEMLNMGFIDDVKEILKASGPEK
RMLFFSATMPKPILGIARKYMQNYEHVSVSNMETVTDLTEQIYFEVREGDKFEALCRIID
IEEEFYGLVFCRTKNDTTQIAQKLGDRGYAADALNGDMSQQEREKILNHFRKQKLNILVA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAVTFVTSKEYRRLTYIK
KSAKSQIKKGMLPEIEDVIKARKARVKNDLEAIIKEGGHEDFLEMSKTLLEEYPEEMVLA
SLLKYTFKDAFDESNYSEINGNSYVDKTGKTRLFIAMGKADDMTPTKLCDFIKNEAGEED
MKIGDIEIFPHFSFVSVPFAQAEILLGMFKNRKKGRKPFVDIAQGKNRKNDRPRGNWKQR
DGGKQGEGRKQGGNWKNRDGGKHAGKQKFKKASKIPA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggaacttggactttcggaaagcacattgaaagcccta
caaaagaaaggttttgaagaaccaacccctattcaggaaaaaattatccctctcttcctg
ggaggagaatgtgacattatcggacaggcccagacagggaccggtaaaacagcagcattc
ggggcccccattatcgaaaaaattcctgaaaaaacaggaaaggtccaggcaataatcctg
acccctacccgggaactggcaattcaggtctcggaagaactcaactcccttaaaggagga
aagaacctgcagatcattccgatctacgggggacagtccatgacccggcagctcaggatg
ctgaaaagcggagtggacatcgttgtgggaacccccggaagggtcattgaccacatccag
cgaaaaagcctgaaacttgacaacatttcatacttcgtgcttgacgaagccgatgagatg
ctgaacatgggtttcatcgatgatgtgaaggaaatcctgaaggcttcagggcctgaaaaa
aggatgctcttcttttccgcaacaatgcctaaaccgatcctcggcattgcgcggaagtac
atgcaaaactacgagcatgtttccgtaagtaacatggaaactgtcacggacctgaccgag
cagatctattttgaagtcagggaaggcgataagttcgaagccctctgcaggattatcgat
atcgaagaggagttctacggactggtcttttgccggacaaaaaacgacaccacccagatt
gcccagaaactaggggacagaggctatgccgctgatgcccttaacggggatatgagccag
caggaaagagaaaagatcctgaaccatttcaggaaacagaagctcaacatcctggtggca
accgacgttgcagcaaggggaatcgacatcatggacctgacccatgtaattaactacagt
cttccccaggacccggagtcctacgtacacaggatcggaagaactggcagggcaggaaaa
caggggactgcagttacctttgtaacatctaaggaataccgcaggctgacttacataaaa
aagagtgcgaaatcccagatcaaaaaaggtatgctccccgaaatagaagacgttataaaa
gccaggaaagcaagggtgaaaaacgacctcgaagccatcataaaagaaggtggacacgag
gacttccttgagatgagcaaaacccttctggaagaatatcccgaagaaatggtcctggct
tcccttttgaaatacactttcaaggacgccttcgacgagagcaattattcggaaatcaac
ggcaattcctatgtcgacaaaacaggaaaaacccggcttttcatagccatgggcaaagcc
gacgacatgactccgaccaagctctgcgatttcataaagaacgaagccggggaagaagat
atgaaaataggagatatcgagatcttcccccacttttccttcgtatccgtcccattcgcc
caggccgaaatcttgctgggtatgtttaaaaacaggaaaaagggaagaaaaccctttgtg
gacattgcccagggaaagaacaggaaaaatgataggccaagaggaaactggaaacagaga
gatggtggaaaacagggagaaggccggaaacaaggaggaaactggaaaaacagagatggt
ggaaaacatgccgggaaacaaaaattcaaaaaagcaagtaaaatcccggcctga
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