KEGG   Methanosarcina sp. MTP4: MSMTP_0783
Entry
MSMTP_0783        CDS       T03850                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
metm  Methanosarcina sp. MTP4
Pathway
metm03030  DNA replication
metm03410  Base excision repair
metm03420  Nucleotide excision repair
metm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:metm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSMTP_0783
   03410 Base excision repair
    MSMTP_0783
   03420 Nucleotide excision repair
    MSMTP_0783
   03430 Mismatch repair
    MSMTP_0783
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:metm03032]
    MSMTP_0783
   03400 DNA repair and recombination proteins [BR:metm03400]
    MSMTP_0783
Enzymes [BR:metm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSMTP_0783
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSMTP_0783
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSMTP_0783
DNA replication proteins [BR:metm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSMTP_0783
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSMTP_0783
DNA repair and recombination proteins [BR:metm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSMTP_0783
   NER (nucleotide excision repair)
    Other NER factors
     MSMTP_0783
   MMR (mismatch excision repair)
    Other MMR factors
     MSMTP_0783
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AKB24252
UniProt: A0A0E3NVC9
LinkDB
Position
complement(947324..948928)
AA seq 534 aa
MEVEELPLATHFIMSEVFPAWTGKQLGIGTSLLYASLSKASGMSVKSIEALIRTTGDIGE
TALLILKEKKKNQITFTSFLEEESEFSISEVYQRFITASEATGKGSQNLKIKNLQFLFNS
SNPREAKFIARLALEELRIGVGEGVVRDAIAKAFNVPADVVEQAFMVTNDLGDVAAAAKA
EGVEGLKKLGIEINRPIKMMLSQISPDIDADIRDMKEAAIEWKFDGARVQIHKDRNSVTI
FSRKLENVTNSLPDLVDIVRKHVKAESAILDGEAVAVAEDGKPRAFQEILKRFRRKYDVA
EKAASIPIQLNLFDIMYLNGETLIYLPLRERRKALRSCVESSVEDSRSISVDEQVITGDL
ELVEKIYQEALDAGHEGIMVKNPDSIYSPGKRGKNWLKKKPLMETLDLVVIGAEWGFGRR
ANLIGSYTVGCYDSDTTRFLQIGKVGTGLSDEQLKELTEMLSGLMGGEAGGVFAVRPKVV
VEIAFEEIQKSPNYDSGFALRFPRFIRIRNDKAPDEADNIQRIERVYSQQRKKL
NT seq 1605 nt   +upstreamnt  +downstreamnt
gtggaagttgaagaactgcccctggcaacccactttatcatgagtgaagtgttccctgcc
tggacaggaaaacagctggggatagggaccagcctcctttatgcgtctctttcgaaagcg
tcggggatgtcggtaaagagtattgaagccctgatccggaccacaggggacataggggag
accgccctcctgatcctgaaggaaaagaagaaaaaccagatcacttttacttctttcctg
gaagaggagtccgaattttccatctccgaagtctaccagcgtttcattaccgcttccgaa
gccacgggaaaaggctcccagaacttgaaaatcaaaaatcttcagttccttttcaactct
tccaaccccagggaagcaaagttcatagcccgcctcgcccttgaagagctgcgcatcgga
gttggggaaggcgtcgtcagggatgctattgcaaaggctttcaacgtgccggcagatgtt
gtggaacaagcttttatggtcacaaacgacctgggggatgtggctgccgcagccaaggcc
gagggagttgagggcctgaaaaagcttgggatcgaaataaaccgccccatcaaaatgatg
ctctcccagatcagcccggacatcgatgctgatatcagggacatgaaggaagctgcaatc
gaatggaagttcgacggagccagggtccagatccacaaggacagaaattcggtaaccatt
ttctcaaggaaactcgaaaacgtaacaaactccctccccgaccttgtggacatcgtccgg
aagcatgtgaaagctgaatccgcaatcctggacggggaagccgtagctgtggcagaagac
ggcaaaccgagggctttccaggagatcctgaagcgtttccggcgcaagtatgacgtggct
gagaaagccgcctctattccgattcagctcaatctctttgacatcatgtacctgaacggg
gagacccttatctacctccccctccgcgagcggcgaaaagccctccggtcctgcgtggaa
agttcggttgaggattccaggtccatttccgtagacgagcaggtcatcacaggcgatctc
gaactcgtggaaaagatatatcaggaagccctggatgccgggcacgaaggcatcatggtc
aaaaatccggattccatttattcccctggaaaacgtggtaagaactggctcaagaaaaag
cctctaatggaaacccttgaccttgtggtcatcggcgccgaatggggtttcgggagacgg
gccaaccttataggctcgtacacagtcggctgctacgactctgatacaacccgcttcctg
cagattggcaaggtaggcaccggtctgagtgacgaacagctaaaagagctcacagaaatg
ctctccgggctcatgggcggggaagccggaggagtttttgctgtccggccaaaagtagtg
gtcgaaatcgctttcgaagaaatccagaagagccccaactacgactcgggttttgccctg
cgcttcccccgctttatccgtatccggaacgataaggcccctgatgaagctgacaacatc
cagaggatcgaaagggtctattctcagcagcggaaaaagctataa

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