Methanosarcina sp. MTP4: MSMTP_0884
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Entry
MSMTP_0884 CDS
T03850
Name
(GenBank) tRNA-intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
metm
Methanosarcina sp. MTP4
Brite
KEGG Orthology (KO) [BR:
metm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metm03016
]
MSMTP_0884
Enzymes [BR:
metm01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
MSMTP_0884
Transfer RNA biogenesis [BR:
metm03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
MSMTP_0884
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Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Sen15
Motif
Other DBs
NCBI-ProteinID:
AKB24353
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Position
complement(1082995..1084047)
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AA seq
350 aa
AA seq
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MKAKLKGDRVRAGKEAVNELYKTGYFGRPKGDGLELRLVEAAFLLYRGKLEIELEGKNLD
FRAFFEQSSLRQPNFELKYIVYKDLKERGYYVQPSTTDFRVYPRGSHPGKSAANLFVQVQ
SERQPLPLKALQEAVAAAENVHKQLILAVVDGESDITFYEVKSDAPKGDMAEPYPEVFSE
ATFLEDRVIVWDPSVSESLYNRGFFGKMLDTERLQLSLVESLYLFSKEAIAVKDRNGKEL
TFGEFVENASGIETSFLQKYNVYKDLRDSGNVAKTGFKFGTHFRVYRKVESVQKIPHSEY
LVDAIPADFEFRLPVMSGAVRLANSVRKRMLFAVEREEKVEYLDIGRVKM
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagcaaaactgaaaggagacagagtccgggccggcaaggaagctgtcaacgaactg
tataaaaccggctatttcgggcggcccaaaggtgacgggcttgaactcaggcttgtggaa
gctgcatttctcctgtaccgcgggaagctcgagatcgagctggaaggaaaaaacctggat
ttcagggcctttttcgaacagtcctccctcaggcagcctaattttgagttgaagtatatt
gtttacaaggacctgaaggaaagggggtactatgtccagccctcgaccacggacttcagg
gtctaccccaggggcagccaccccgggaaaagtgctgcaaatctttttgtccaggtccag
tccgaaaggcagcctcttccgctaaaggccctgcaggaagctgtagcagcggcagaaaac
gtacacaaacagctgatccttgctgtcgtggacggggaaagcgacatcaccttctatgaa
gtaaaaagtgatgcccctaagggagatatggcagaaccgtaccctgaagtattttccgaa
gcgacctttcttgaagacagggtgattgtctgggacccttccgtttccgaatccctctat
aacaggggctttttcgggaaaatgctggatactgaacggcttcaactttcccttgtggaa
tccctctaccttttctctaaagaggccattgcggtcaaagacaggaatgggaaggaactt
acattcggggaattcgtggagaatgcctcggggattgaaacatctttcctgcaaaaatac
aacgtgtataaagatctcagggactcggggaatgttgccaagaccggctttaagttcggg
acccatttcagggtctatcggaaggttgagtccgtgcaaaagatcccccattctgagtac
ctggtagacgccatacctgcggattttgagttcaggcttcctgtaatgtccggagccgtg
cgccttgcaaacagtgtccggaagaggatgctttttgcggttgaaagagaggaaaaagta
gaatacctcgatatcggcagagttaaaatgtaa
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