Methanosarcina sp. MTP4: MSMTP_1264
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Entry
MSMTP_1264 CDS
T03850
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
metm
Methanosarcina sp. MTP4
Pathway
metm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
metm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSMTP_1264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
metm03400
]
MSMTP_1264
DNA repair and recombination proteins [BR:
metm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSMTP_1264
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSMTP_1264
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
AAA_16
P-loop_SecA
DUF87
Kinesin
UB2H
SWI2_SNF2
AAA_25
ACDC
Motif
Other DBs
NCBI-ProteinID:
AKB24733
UniProt:
A0A0E3NVM4
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All DBs
Position
1621932..1623902
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AA seq
656 aa
AA seq
DB search
MTSSSQLAKVSPEPQFKLTSEFSPKGSQPEAIEKLVEGLNKGDRFQTLLGVTGSGKTYTV
ANVINQVRKPTLVVAHNKTLAAQLYNEFREFFPENRVEYFVSYYDYYQPESYLPAKDQYI
EKDASINPKIEQMRLAATASLMSRPDVIVVASVSCIYGLGNPENFQKMGFELKVGDRVSR
KEVLGKLVDILYERNDLELMPGRFRVKGDTIDIIPGYFDNIIRIELFGDEVDRISEIDKQ
TGQRKEDMEYFFIYPARHYVIPEEDQKSAIKDILKELEEHLPTLDLLESHRLKQRTLYDI
EMIEETGSCKGIENYSRHFDHRKPGEKPFCLLDYFPDDFLLVVDESHQTLPQLHGMYKGD
YSRKKSLVDYGFRLPSAFDNRPLRFEETELYMKNVIFVSATPGEYERERSAQVVEQIIRP
TGLVDPEVEVRPLEGQVKDVMEEIRKIVERGDRALVTTLTKKLAEELTDYLARNEIKARY
LHSDIKTIERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDTKSL
IQIIGRAARNASSTVVLYADNMTDSIKRALGETERRRAMQIAYNQKHGIVPKTIRKPIKE
KVVDITATKHIPKSDIPNVIIELETEMREAADRLDFEEAIRLRDMVKKLEKEIKVA
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgtccagccagctcgcaaaagtctctcccgaaccgcagttcaagcttacatcc
gagttcagtccaaagggctcccagccggaggctatcgaaaagcttgttgaagggctgaat
aaaggagaccggttccagacccttctcggggttaccggttcaggtaagacttacaccgtg
gcaaatgtcataaatcaggtccggaaaccgacccttgtagtagcccacaacaagacgctg
gcggctcagctctataacgaattcagggagtttttcccggaaaaccgggtggagtatttc
gtctcctactacgactactaccagcccgagtcctacctgcctgcaaaggaccagtacatt
gaaaaagacgccagcatcaaccccaagatcgagcagatgaggcttgcagccacagcttcc
cttatgtcccggcccgacgtgattgtggttgcttccgtgtcctgcatatacggtctcggg
aacccggaaaactttcagaaaatggggtttgagctgaaggtaggggacagggtttcgaga
aaagaggtcctgggcaagctcgtcgatatcctgtacgaacgaaacgaccttgaactcatg
cccgggcgcttccgggtaaagggagacaccattgacattatccccgggtactttgacaac
atcataaggatcgaacttttcggggacgaggtagaccggatttccgaaatcgacaagcag
accggccagcgaaaggaagacatggaatatttctttatctatcccgcccggcactacgtc
attcccgaagaggatcagaaaagcgccattaaagacatcctcaaagagctggaagagcac
cttcctaccctggacctccttgagtcccaccgtctgaaacagcgtaccctttatgacatc
gagatgatcgaggagaccgggagctgcaagggcattgaaaactattcccggcacttcgac
caccggaaacccggggaaaaacccttttgtcttctggactatttccccgacgactttctc
ctggttgtcgacgagagccaccagaccctcccccagcttcacgggatgtacaaaggggac
tactcccggaaaaagagccttgtagattacgggttcaggctccccagtgctttcgataac
cggccgctccgcttcgaggaaaccgagctgtacatgaaaaacgtgatcttcgtctcggca
actcccggggaatacgaaagggaacgctcggctcaggtcgtggaacagatcatccgtccc
acgggtcttgtggatcccgaagttgaagtccgtcctctggaaggccaggtcaaagacgtt
atggaagagatcaggaagatcgtggaacggggcgaccgcgccctggttaccaccctgacc
aagaagcttgccgaagagctgactgactaccttgccaggaacgaaatcaaagcccgctac
ctccactcggacatcaagaccatcgagcggaccgagatcatccgggaactccgtctgggc
aagttcgacgtcctggtcgggatcaacctgttgcgggaagggctcgacatccccgaagtg
ggcttcatcggcatcctggacgcggataaggaaggctttctcagggatacaaagagcctg
atccagatcatcggcagggctgcaagaaatgccagctcgacagtggtcctctacgccgac
aacatgaccgattccatcaaaagagctttgggcgagaccgagcgccgccgggccatgcag
atcgcctacaaccagaagcacggcatagtcccgaaaaccataaggaaacccatcaaggaa
aaggtcgtggacatcaccgctacgaagcatatcccgaagtccgacatcccgaacgtgatc
atcgagctggaaacagagatgagggaagcggcggacaggctggactttgaagaagcgatc
cggctaagggacatggtcaagaagctggaaaaagagataaaagtggcttga
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