Methanosarcina sp. MTP4: MSMTP_1601
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Entry
MSMTP_1601 CDS
T03850
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
metm
Methanosarcina sp. MTP4
Pathway
metm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMTP_1601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metm03019
]
MSMTP_1601
03009 Ribosome biogenesis [BR:
metm03009
]
MSMTP_1601
Enzymes [BR:
metm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSMTP_1601
Messenger RNA biogenesis [BR:
metm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSMTP_1601
Ribosome biogenesis [BR:
metm03009
]
Prokaryotic type
rRNA helicases
MSMTP_1601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
PFK
P-loop_SecA
SWI2_SNF2
Flavi_DEAD
V-ATPase_H_C
Motif
Other DBs
NCBI-ProteinID:
AKB25070
UniProt:
A0A0E3NWC6
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All DBs
Position
complement(2078730..2079941)
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AA seq
403 aa
AA seq
DB search
MNNFKKLGLSNAVLKSINEHGFESPTAIQEKSIPLILAGEDVIAGSATGSGKTLSFASGI
LQNSEKGKGIQALILTPTRELAEQVANTFRKFSKYDPLKIASIYGGVGINPQIKELKNAE
VVVGTPGRLLDHISRNTIKFNNVKTLVLDEADHMFDLGFKVDVEKIIKKCPQNRQTLLFS
ATISKDVVQLSRKHMENPVRVSVESYIDPQKLNQVVYKVQDDMKLSLLVHLLQNEKSNLG
MVFCNTKRNTDKVAKNLRKVGIDALAIHGGLTQNKRTRIMEEFHSGNICVLVCTDVAGRG
IDIQGVSHVYNYDIPKESKQYIHRIGRTARAGTEGKAINILSKNDHANFMSVLKDNDVDI
KGQALPALKKIVIEKPGRRLPKPVNKMKNPSRKGQQYTRHRNK
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaataattttaaaaaactaggcctcagtaatgctgttttgaaatcaataaatgaacat
ggctttgaaagccctacagcaatacaggaaaaatcaattcccctaatacttgctggggaa
gatgttatagccggatccgcaacaggttccggaaaaacactctcatttgcttctggcata
ttacaaaattccgaaaaaggaaaaggaattcaggctttgatcctgacccctacaagagaa
ctggcggagcaggtggcaaatactttcaggaaattctcaaaatacgacccgctaaaaatc
gcatctatctatggcggtgtagggatcaatccacaaattaaagaattaaagaatgccgag
gttgttgttggaacacccggtaggctactcgatcatatcagcagaaataccatcaaattc
aataatgtgaaaacacttgtccttgatgaggcagaccatatgtttgatctgggattcaaa
gtggatgtagaaaaaatcatcaagaaatgtcctcaaaacaggcagacccttttgttctct
gcaaccatttcaaaagatgttgtccagctttcccgcaagcacatggaaaacccggttcga
gtatcagtagagtcttatatcgacccgcaaaaattgaatcaggttgtttataaagtgcag
gatgatatgaaattatctctgcttgtgcaccttctacaaaatgagaagtcaaacctcggg
atggttttctgcaacacaaaaagaaacactgacaaagtcgcaaaaaacctgagaaaagta
ggtatcgatgccctggcaattcatggcggattgacacagaacaaacgaactcgcataatg
gaagaattccattccgggaacatatgtgtccttgtatgcacagatgtagccggaagagga
attgatatacagggtgtttcccatgtttacaattatgatattcccaaggagagtaaacag
tatattcacaggattggaagaactgcacgagcaggaacagaaggaaaagcgataaatatc
ctttccaaaaatgaccatgctaatttcatgagtgtgctgaaagacaatgatgtagatatt
aagggacaggcactacctgctctaaagaaaattgtaattgaaaaaccgggaagaagattg
ccaaagccggtaaataaaatgaaaaacccctccagaaaaggtcagcaatataccaggcac
agaaacaagtga
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