KEGG   Methanosarcina sp. MTP4: MSMTP_1963
Entry
MSMTP_1963        CDS       T03850                                 
Name
(GenBank) Ribonuclease PH
  KO
K11600  exosome complex component RRP41
Organism
metm  Methanosarcina sp. MTP4
Pathway
metm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:metm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSMTP_1963
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:metm03019]
    MSMTP_1963
Messenger RNA biogenesis [BR:metm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MSMTP_1963
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     MSMTP_1963
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: AKB25432
UniProt: A0A0E3NX42
LinkDB
Position
complement(2595415..2596770)
AA seq 451 aa
MSGKPEKLITDDGLRLDGRRMDEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVYGPREA
HPRRMQRPDSAVIRYRYNMAAFSVEDRARPGHSRRSIEISKVSRDAFEPVIMSELYPKAA
IDIFVEVLQADAGTRTAAINASSVALADAGIPMKGLVTSCAFGKVDGQVVLDLSKDEDNY
GDADFPVALTQDGEITLVQMDGHLTQDEIKKGLELVKKGCSQIFALQQAALRTKFEFPEA
EEAEELEEEEAVEAAEAEISEVAAKYAGTTEVEEAAEADEVISEEEEAEESEGEAEESDE
VISEEEEAEESEEESEEEAEESEEESEEEAEESEEESEEETEESEAESEEEAEESEEESE
EETEESEEESEEEAEESEEESEEEAEEESFEEEFEAETEEEAEEELEADEEEEEIPAEEL
EEEAEEEAEGPWKVVKDPLDPEAGNGGENDE
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgagcggtaaacctgaaaaattaattactgatgacgggctgcgccttgacgggaggcgt
atggatgagatcaggcccatgaaaatagaagtcggcgtactttcaagagccgatggttcc
tgttatcttgaatggggcaggaacaagatcctggtaggggtatacggccccagagaagca
cacccccgtcgaatgcagcgtccagactctgcagttatccgctacagatacaatatggct
gctttttccgttgaagaccgcgcccgccccgggcacagcaggcggagcattgaaatctca
aaggtttccagggatgccttcgagcctgtgatcatgagtgaactgtacccgaaagcggct
attgatatctttgttgaagtcctccaggcagatgcggggacaaggaccgccgcaatcaat
gcttcatctgttgctcttgccgatgctggcattcccatgaaggggcttgtgacttcctgt
gcttttggaaaggtagacggtcaggtcgttctcgacctcagcaaagatgaggataactac
ggagatgctgatttcccggtggccctgactcaagatggggaaattaccctggtccagatg
gacgggcacctcacccaggatgaaattaagaagggtctggaacttgtgaagaaaggctgc
agccagatctttgcactccagcaggctgccctcaggacaaagttcgagtttccggaagca
gaggaagccgaagagcttgaggaagaggaagccgttgaagctgcagaagccgaaatctct
gaagtggccgccaaatatgcgggcacaaccgaagttgaagaggcagcagaggctgatgaa
gtaatttccgaggaagaggaagccgaggaatctgagggagaagccgaggaatctgatgaa
gtaatttccgaggaagaggaagccgaggaatccgaagaagaatctgaggaagaagccgag
gaatccgaagaggaatctgaggaagaagccgaggaatccgaagaggaatctgaggaagaa
accgaggaatccgaagcggaatctgaggaagaagccgaggaatccgaagaggaatctgag
gaagaaaccgaggaatccgaagaggaatctgaggaagaagccgaggaatccgaagaggaa
tctgaagaggaagctgaagaagaatccttcgaagaagaattcgaggctgaaaccgaagaa
gaggctgaggaagagctcgaagctgacgaagaggaagaagaaattccggcagaagagctt
gaagaggaagctgaggaagaggccgaagggccctggaaggttgtcaaggaccctctcgat
cctgaagccgggaacggaggtgaaaacgatgagtga

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