Methanosarcina sp. MTP4: MSMTP_1963
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Entry
MSMTP_1963 CDS
T03850
Name
(GenBank) Ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
metm
Methanosarcina sp. MTP4
Pathway
metm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMTP_1963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metm03019
]
MSMTP_1963
Messenger RNA biogenesis [BR:
metm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSMTP_1963
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSMTP_1963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AKB25432
UniProt:
A0A0E3NX42
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All DBs
Position
complement(2595415..2596770)
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AA seq
451 aa
AA seq
DB search
MSGKPEKLITDDGLRLDGRRMDEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVYGPREA
HPRRMQRPDSAVIRYRYNMAAFSVEDRARPGHSRRSIEISKVSRDAFEPVIMSELYPKAA
IDIFVEVLQADAGTRTAAINASSVALADAGIPMKGLVTSCAFGKVDGQVVLDLSKDEDNY
GDADFPVALTQDGEITLVQMDGHLTQDEIKKGLELVKKGCSQIFALQQAALRTKFEFPEA
EEAEELEEEEAVEAAEAEISEVAAKYAGTTEVEEAAEADEVISEEEEAEESEGEAEESDE
VISEEEEAEESEEESEEEAEESEEESEEEAEESEEESEEETEESEAESEEEAEESEEESE
EETEESEEESEEEAEESEEESEEEAEEESFEEEFEAETEEEAEEELEADEEEEEIPAEEL
EEEAEEEAEGPWKVVKDPLDPEAGNGGENDE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtaaacctgaaaaattaattactgatgacgggctgcgccttgacgggaggcgt
atggatgagatcaggcccatgaaaatagaagtcggcgtactttcaagagccgatggttcc
tgttatcttgaatggggcaggaacaagatcctggtaggggtatacggccccagagaagca
cacccccgtcgaatgcagcgtccagactctgcagttatccgctacagatacaatatggct
gctttttccgttgaagaccgcgcccgccccgggcacagcaggcggagcattgaaatctca
aaggtttccagggatgccttcgagcctgtgatcatgagtgaactgtacccgaaagcggct
attgatatctttgttgaagtcctccaggcagatgcggggacaaggaccgccgcaatcaat
gcttcatctgttgctcttgccgatgctggcattcccatgaaggggcttgtgacttcctgt
gcttttggaaaggtagacggtcaggtcgttctcgacctcagcaaagatgaggataactac
ggagatgctgatttcccggtggccctgactcaagatggggaaattaccctggtccagatg
gacgggcacctcacccaggatgaaattaagaagggtctggaacttgtgaagaaaggctgc
agccagatctttgcactccagcaggctgccctcaggacaaagttcgagtttccggaagca
gaggaagccgaagagcttgaggaagaggaagccgttgaagctgcagaagccgaaatctct
gaagtggccgccaaatatgcgggcacaaccgaagttgaagaggcagcagaggctgatgaa
gtaatttccgaggaagaggaagccgaggaatctgagggagaagccgaggaatctgatgaa
gtaatttccgaggaagaggaagccgaggaatccgaagaagaatctgaggaagaagccgag
gaatccgaagaggaatctgaggaagaagccgaggaatccgaagaggaatctgaggaagaa
accgaggaatccgaagcggaatctgaggaagaagccgaggaatccgaagaggaatctgag
gaagaaaccgaggaatccgaagaggaatctgaggaagaagccgaggaatccgaagaggaa
tctgaagaggaagctgaagaagaatccttcgaagaagaattcgaggctgaaaccgaagaa
gaggctgaggaagagctcgaagctgacgaagaggaagaagaaattccggcagaagagctt
gaagaggaagctgaggaagaggccgaagggccctggaaggttgtcaaggaccctctcgat
cctgaagccgggaacggaggtgaaaacgatgagtga
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