Methanosarcina sp. MTP4: MSMTP_2199
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Entry
MSMTP_2199 CDS
T03850
Name
(GenBank) Putative ski2-type helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
metm
Methanosarcina sp. MTP4
Brite
KEGG Orthology (KO) [BR:
metm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metm03019
]
MSMTP_2199
Messenger RNA biogenesis [BR:
metm03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
MSMTP_2199
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Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
MGP3_C
DEXQc_Suv3
HVO_A0261_N
AAA_34
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AKB25668
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Position
2898533..2901016
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AA seq
827 aa
AA seq
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MTLWVLISAEKSKLTLMTIKDRMKQPLAVAELVLKNGSKGPRPHKIRVLANNKKKEEFLP
PQKFIELLRSANRVMLAEGGDPANSAAFLEMLEGFQLKADKVDICRHCLLNKRFNFVNKK
SIKFHNELICRECAKEELLRGVRTAEGNYGEKSVDFLEQVLLKTRDLDRTLRMLTPERLD
PEFTRYDTIETNPSTTSVRIKELPLAKKFKQMLLEKSDTLLPVQALSVEAGLLEGKNQFV
VSATATGKTLIGEMAGIQNLLKRKGKMLYLVPLVALANQKYDQFTTRYTKLGLTTSIKIG
AILIKTTQRVKMHTTLNSDIIVGTYEGLDHILRSGNADFLGKIGTVVIDEVHTLEDQERG
HRLDGAIARLRYIAPEAQFIYLSATVASPGSYAKKLGAELILYEHRPVPIDRHLLFCQES
EKTQLITRLSKEEYSRISSKKHRGQTIVFTNSRRNCHRLASAISIQAAPYHAGLSQYERK
KVETQFGEGKLPVIVTTAALAAGVDFPASQVIFESLAMGIDWLSVQDFLQMSGRAGRPDY
HDRGVVVLMPVPGKSYASSQSETEEELAIKLLQGEMLSSGVEYGEAEQLEEVLASVAVTA
SIRDLKSIHQLMFGSFELEKLVSRLQKYRFIERKGDRVTLTRFGKIVSAHFLSLSKAFLI
RDAVLMENSPLRIVTNLEFFDAAYFKYANQIGSTLHVNMPSRVFQGAALDIVFDGDSLAL
LNIKIQDLLMNFADDFLTCTCKDSPYCGCAEQKFSEEIVRLRTEGLDPTRIVKKLEDKYG
ISAYQGDIFGYLDGAVRNLDAVELIAKVHSKKGIAEEAHKLKKQIQG
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgacgctctgggtcctcatctccgctgaaaaatcgaaactaaccttaatgacgataaag
gaccggatgaaacaacctctcgcggtggctgaactcgtcctgaaaaacgggtcaaaggga
ccgcgtccacacaaaataagggttcttgcgaacaacaagaaaaaagaggagtttcttccg
cctcaaaaattcatagaactgctccgcagtgcaaacagggtcatgctggcagagggaggg
gaccctgcaaattcggctgctttcctggaaatgctggaaggttttcagttgaaggcagac
aaagttgatatttgcaggcactgcctgctcaataaacgctttaactttgtcaacaaaaaa
tcaatcaaattccataacgaactcatctgcagggaatgtgcaaaagaagaactcctgaga
ggagtgcggaccgcggaaggaaattacggggaaaagtccgtggacttcctggaacaggtc
ttgctcaagaccagggacctggaccggacactccggatgcttacccctgagcgactggac
ccggagttcacccgttatgacaccatcgaaacaaacccctcgacgacttcggtgcggata
aaggagctgcccctggcaaaaaaattcaagcaaatgctcctggaaaaatccgataccttg
cttcccgtacaggcactttccgtggaagccggactgctggaagggaagaaccagttcgtt
gtctcggcaacggcaacagggaagaccctcatcggggagatggcaggtatccagaacctc
ctgaaaaggaaaggaaaaatgctctacctggtccccctggtcgccctggcaaaccagaaa
tacgaccagttcacaacacgttacacgaaactcgggctcaccacatccattaaaatcggg
gcaatccttatcaagacaacccagcgggtgaagatgcataccaccctgaactcggatatc
atagtcggaacctacgaagggctggaccacatcctccggtccgggaatgcggacttcctc
gggaaaataggaactgtagtaattgacgaagtccataccctggaagaccaggaaagggga
cacaggctggacggggccatagcaaggctgcgttatatagccccggaagcccagttcatc
tatctttccgcaaccgttgcaagccccgggtcctatgcaaaaaagctcggtgcagaactg
atcctctatgaacaccgccctgtacctattgaccggcacctgctcttctgccaggaaagt
gagaaaacccagctaattacccggctttcaaaggaagaatactcccggatatcttcaaag
aagcaccgcggacagaccattgtctttacaaactccaggcgaaactgccacaggctagct
tccgcaatttcgatccaggcggctccctatcatgcggggctttcccagtacgagcgcaaa
aaagtggagacccaattcggagaaggaaaactcccggtcatagtgaccaccgcagccctg
gccgcaggcgtggacttcccggcgtcccaggttattttcgagtcccttgcaatgggaatc
gactggctctctgtccaggacttcctccagatgagcgggagggcagggaggcctgattac
cacgacaggggcgtggtcgtgctcatgccggtccccggaaaatcctacgccagttcccag
tcggaaacggaagaagagcttgcaatcaaactcctgcagggagagatgctctcatcaggg
gttgaatatggggaagccgaacagctggaagaagttctggcatcagttgccgtgaccgcc
tcgatccgggacctgaaaagcatccatcaacttatgttcgggagcttcgaactggaaaaa
ctggtttcccggcttcagaagtaccgctttatagaaagaaaaggggacagggtaacgctt
acccgctttggaaagatagtttccgcccacttcctttcgctctcgaaagccttcctgata
agggacgccgtgcttatggaaaacagccccctgaggatcgtgacgaacctggaatttttc
gatgccgcatattttaagtacgccaaccagataggaagcaccctccacgtgaacatgcct
tcaagggtcttccagggagcagcccttgacatcgtttttgacggagattccctggctctt
ctcaacattaaaatccaggaccttctaatgaattttgccgatgatttccttacctgtacc
tgcaaggattcgccatattgcggctgtgccgagcagaagttttccgaagaaatagtccgg
ctgcggacagaaggactggaccctacccggatagtgaaaaagcttgaagataagtacggg
atttccgcatatcagggggatatatttgggtacctggatggcgcggtgagaaatcttgac
gctgtggaactgattgcaaaagtccattcaaagaaagggattgctgaagaagcccacaag
ttgaaaaaacaaatccagggctaa
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