Methanosarcina sp. MTP4: MSMTP_2619
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Entry
MSMTP_2619 CDS
T03850
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
metm
Methanosarcina sp. MTP4
Pathway
metm03410
Base excision repair
metm03430
Mismatch repair
metm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
metm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSMTP_2619
03430 Mismatch repair
MSMTP_2619
03440 Homologous recombination
MSMTP_2619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
metm03400
]
MSMTP_2619
DNA repair and recombination proteins [BR:
metm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MSMTP_2619
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MSMTP_2619
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSMTP_2619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
SelA
Motif
Other DBs
NCBI-ProteinID:
AKB26088
UniProt:
A0A0E3NYP8
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All DBs
Position
3423657..3425057
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AA seq
466 aa
AA seq
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MSEQMEVLRKRAEKCAEEIKKHRAVHVVSHIDADGLTSAGIICTALERGGFEYSARFVKQ
LNEAALDEIADENHELVVFTDLGSGMCEQIKARGIQAIVSDHHQPQGDLEFHLNPHLFGA
NGSYELSGSGSTYLLASALGKNRDLSTLAIVGAIGDMQHMKMGQLVGINREILEEGVGGG
CLKFMKDLTLFGKQTRPIFKLLQYSSDPYLPGLTGNEEGCIGFLHDLNIRFSQDERWRRW
IDLETPEKQKIVSGLIQYCLKAGIPSYKIERLVGEVYVLLKEREGTEMRDASEFSTLLNA
TARYDHAEIGLAVCMGDREEAYEKARELLAEHRQNLVNGLVFVKEKGITELENIQYFDAG
SEIKETIVGIIAGMSSTIVRNRNLPIIAFANTEGGVKVSARGTQDLIRRGINLSEAMTKI
SAEVGGAGGGHDIAAGATIPESSKEEFTRKLDLFIGGQLKERANAR
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcaaatggaagtactccgaaaaagagccgagaagtgcgctgaagaaataaaa
aaacacagggcagtccatgtggtatcccatatcgacgccgacgggctgacctcagcaggt
ataatctgcactgcccttgagaggggaggattcgagtacagtgcccgctttgtaaaacag
ctcaacgaagcagccctggatgagattgctgacgaaaaccacgaacttgtcgtctttact
gacctgggcagcgggatgtgcgagcagataaaagcccgcgggatccaggctattgtctca
gaccaccaccagccccagggagacctggagttccacctgaacccacacctcttcggggca
aacggctcctatgaactgagtggctcgggcagtacctacctcctggcctcggccctggga
aaaaaccgcgacttatccacactcgcaatagttggggcaatcggggacatgcagcacatg
aaaatgggccagcttgtagggatcaaccgggaaatcctggaagagggagttggaggaggc
tgccttaagttcatgaaagacctgaccctttttggaaaacagacccgcccgatcttcaag
ctgctccagtattcctcagacccctacctccccgggcttacaggtaatgaggaaggctgc
atcgggtttttgcacgacctgaatatccgcttcagccaggacgagcgctggagacgctgg
atcgacctggaaacccctgaaaagcaaaaaatcgtctcagggcttatccagtactgcctg
aaagccgggattccctcctacaagatcgaaaggctggttggggaggtctatgtcctcctg
aaagagcgggaaggcacggaaatgagagatgcttccgagttttccaccctcctcaacgcc
acagcccgctacgaccatgccgaaatagggcttgcggtctgcatgggcgatagggaagaa
gcctacgaaaaagcccgcgaactgcttgcggaacacaggcaaaacctcgtgaatgggctt
gtctttgtcaaggagaaggggatcactgaacttgaaaacatccagtacttcgacgcaggc
tcagagataaaggaaacaatcgtaggaattattgccgggatgagttcaaccattgtccgg
aaccggaacctgcctattattgcttttgcaaacaccgaaggaggcgtcaaggtctcggca
aggggcacccaggatttgatccggcgggggattaacctctcggaagccatgacaaaaatc
tctgcagaggtcggcggggccgggggcggacacgacattgcagccggggcaacgattccg
gagagttcaaaagaagaatttacccgaaaactggacctctttatcggggggcagttgaag
gagagggcaaatgccaggtaa
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