Methanobacterium sp. MZ-A1: BK008_01695
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Entry
BK008_01695 CDS
T05317
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
metn
Methanobacterium sp. MZ-A1
Brite
KEGG Orthology (KO) [BR:
metn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metn03016
]
BK008_01695
Enzymes [BR:
metn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BK008_01695
Transfer RNA biogenesis [BR:
metn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BK008_01695
Prokaryotic type
tRNA splicing ligases
BK008_01695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AUB57162
LinkDB
All DBs
Position
complement(335488..336936)
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AA seq
482 aa
AA seq
DB search
MVMEETLKKVRDCVWEVPGDYKKEMRVPGRIYLDDESIKTLEKGAVDQVANVACLPGIQK
FSIGLPDIHFGYGFSIGGVGAFSSRTGVISPGGVGFDINCGVRLLRTDLTYDEVQPRIKE
LIDVMFRNVPSGVGSKGKIRLREGEIDDVLDNGAKWAVENGYGWEEDLEYLEEKGCMADA
DSARVSDKAKKRGIPQLGSLGSGNHFLEVQKVEEIFDKEAAETFGLEEGQVTVLIHSGSR
GCGHQVCSDYLRTMDKAAKRYQINLPDRQLACAPVESEEAQDYFAAMSAAANYAWTNRQM
IVHWVRESFEQIFHTDAEDMGMKIVYDVAHNIAKKEIHTIKGKNNQLYVHRKGATRAFGP
GREELPSDYRKIGQPVLIPGTMGTSSYVLHGTQTAMDETFGSTAHGAGRQMSRAGAKRSY
RGEDILKILEGKGIYVKANSMPVVAEEAPGAYKDVDQVVKTAHTAGISRLVGRMVPMGVA
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggttatggaagaaactcttaaaaaggtacgtgattgtgtttgggaagttcctggagat
tataaaaaggaaatgagagtacctggtcggatatatcttgatgatgagtcaattaaaacc
ctggaaaagggagcagtagatcaggtggccaacgtagcctgcctaccagggatacagaaa
ttttccataggcctacctgacatccacttcggctacggattcagcataggtggggtcgga
gctttcagcagtcgaaccggagttataagtcctggaggggtgggatttgatataaactgt
ggtgtaagacttctccgcacagatctaacctatgatgaggttcagccccgaatcaaagaa
ctgattgatgtcatgttccggaacgtaccctcaggtgtagggagcaaaggaaaaataaga
ctccgagagggtgaaatcgatgatgtcctggacaacggtgccaagtgggctgtggaaaat
ggttacggctgggaagaagacctggaatacctggaggagaagggatgcatggctgatgcc
gactcggcccgggtgagtgataaggccaagaaaaggggaataccccagctgggcagcctg
ggctcgggaaaccacttcctggaagttcagaaagtagaggaaatattcgataaagaagcc
gctgaaacattcggcctggaagaaggacaggtaaccgtactcatccattctggaagtagg
ggatgcggacaccaggtttgcagtgattacctgcgtaccatggacaaggcagccaaacgt
taccagatcaacctacctgacagacaactagcctgtgcccctgtagaatcagaagaagcc
caggattatttcgcggcaatgtctgctgctgccaactacgcctggaccaaccgacaaatg
attgttcactgggtacgggaatcctttgaacagatattccatacggatgccgaagacatg
ggtatgaagattgtttatgatgtggcccataatattgccaagaaagagatacacaccatt
aaaggaaagaacaatcagctctatgtccatcgaaaaggagccactcgtgcatttgggcct
ggaagagaggaattaccatcagattatcggaaaattggtcagcctgtactcatccctgga
accatgggtacatcttcctatgtcttacacggtacacagactgcaatggatgaaaccttt
ggatccactgcccatggtgccggacgccagatgagccgtgccggtgccaaacgtagctac
cgtggagaagacatcctcaaaatcctggaaggtaagggcatatatgtgaaggccaattcc
atgccagtggtggcagaagaagccccaggagcctataaagatgtggaccaagtggttaaa
accgcacacacagcaggtatctctagattagtgggtagaatggtgccaatgggagtagcc
aagggataa
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