Methanobacterium sp. MZ-A1: BK008_04470
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Entry
BK008_04470 CDS
T05317
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
metn
Methanobacterium sp. MZ-A1
Pathway
metn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BK008_04470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metn03019
]
BK008_04470
Messenger RNA biogenesis [BR:
metn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
BK008_04470
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
BK008_04470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
RRP4_S1
EXOSC1
HypA
DmmA-like_C
Zn_Tnp_IS91
Zn_ribbon_PaaD
Rho_RNA_bind
zf-C2HC_2
Zn_ribbon_8
C1_1
Gar1
Zn_ribbon_3
DUF7129
Zn_ribbon_TiaS
Zn_ribbon_9
Motif
Other DBs
NCBI-ProteinID:
AUB57636
UniProt:
A0A2H4VHV5
LinkDB
All DBs
Position
complement(883768..884337)
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AA seq
189 aa
AA seq
DB search
MKAKNGDFVLPGDALGVTEEFLPSEWTYDDHGEIRSLVAGTVTIDQENKKISIIPKTKSP
VILKKGDVVLGQIREVRGQRALVDVDGIKDSKRSLPITFLGAIHISQARKGYVDKLTDDF
HIGDLIQARVTKVMGVDNADLTTAENELGVLKAMCTNCRHFMKKIGKKEVKCPNCGRKET
RNISSNYGG
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcaaaaaacggagatttcgttcttcctggtgacgctttaggagtcactgaggag
tttctcccgtctgaatggacctatgacgaccatggtgaaatcaggtccctggtggcggga
acagtaaccatagatcaggaaaacaaaaaaatatccataattcccaaaaccaaatcccct
gtaatattaaaaaaaggggacgtagttttagggcagataagagaagttagaggacaaaga
gcactagtagatgtagatggaattaaagacagtaaaagaagtctacccatcactttcctg
ggcgccatacacatttctcaggcaagaaagggatacgtggacaaactcactgatgatttc
catattggagatcttatacaggcccgagtcactaaggtaatgggagtggacaacgctgat
ctcaccactgctgaaaatgaactgggcgttttaaaggccatgtgtaccaactgccgacat
ttcatgaaaaagattggtaaaaaagaagttaaatgccctaactgcggtagaaaagagact
agaaatatctcttcaaattacgggggataa
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