KEGG   Methanobacterium sp. MZ-A1: BK008_06205
Entry
BK008_06205       CDS       T05317                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
metn  Methanobacterium sp. MZ-A1
Pathway
metn03030  DNA replication
metn03410  Base excision repair
metn03420  Nucleotide excision repair
metn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:metn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BK008_06205
   03410 Base excision repair
    BK008_06205
   03420 Nucleotide excision repair
    BK008_06205
   03430 Mismatch repair
    BK008_06205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:metn03032]
    BK008_06205
   03400 DNA repair and recombination proteins [BR:metn03400]
    BK008_06205
Enzymes [BR:metn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BK008_06205
    6.5.1.6  DNA ligase (ATP or NAD+)
     BK008_06205
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BK008_06205
DNA replication proteins [BR:metn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    BK008_06205
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     BK008_06205
DNA repair and recombination proteins [BR:metn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BK008_06205
   NER (nucleotide excision repair)
    Other NER factors
     BK008_06205
   MMR (mismatch excision repair)
    Other MMR factors
     BK008_06205
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AUB57949
UniProt: A0A2H4VIN4
LinkDB
Position
1269731..1271404
AA seq 557 aa
MLYKDLVEVYQDLDSTTKRLEKTDILAKFLSKVGDEEPELLPIVTLLCLGRIFPTWSEEE
LGIGSKLLMKAISQAVGVSPEDVENRMRDTGDIGEAAEELYLKKSQVTLFSRPITIGKVH
RNLVKMAEISGNRAQYKKIDYLMELLSSASPAEAKYITRTVLEELRVGVGEGTIRDAISQ
AFNIPKEVTERAHMLTNDMGLVAEVARMEGGEGLRKLTLKPGKPVKPMLAQLSPSITESV
GEMGWAICETKYDGIRVQIHRHGDKIDIFTRRLENISLALPEISDYIEKSLPHEDFIVEG
EIIASRDGKPISFQYMLQRVRRKYEIDKMVSKIPLTVYLFDVLYYHRPVLDEPLQERRKT
LESIVKVLEGKLELSAQVKVTLEEIGKAQDLFETSIKGGHEGIMIKDPHAPYMPGIRGKK
MLKLKAEPETLDLVVVGGTYGNGKRAHLIGSYLMALQDEDNQLKPLAYAATGLDDQTLLE
LSEMVEPLIISKKGRQVKIEPSIIMEIAFSEIVESPESETGYSLRFPVVKRIRNDLGLDE
IDTLERIESIFRNSEKT
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgctttacaaggatttagtggaagtttaccaggatctggactccaccaccaagcgtctg
gaaaagactgatattttggccaaatttttgtctaaagtaggagatgaagaacctgaactc
ctacctatagtaaccctactatgtctgggtcgaatttttcccacttggagtgaggaagaa
ctgggaattggatcaaaattactgatgaaagccatttcacaggcagttggagtttctcct
gaggatgtggagaatcgtatgcgggacacgggggatattggtgaggctgcagaggaatta
tatctcaaaaaaagccaggtaaccctgttcagccgaccaataaccataggaaaagtacac
cgtaatctggtgaagatggctgaaatttcaggtaaccgggcccaatacaaaaaaatagac
tatttaatggagctattgtcatcagcatcccctgcagaggccaagtacatcacccgaacc
gtactggaagaactacgtgttggtgtgggggaaggaaccatccgtgatgcaatttcacag
gcatttaacatacccaaagaagttacagaacgagcacatatgttaactaacgacatggga
ttggtagcggaggtggcccggatggaaggtggagaagggctgcgtaaactaactcttaaa
cctggaaaaccagtaaaacccatgctggcacagttatctccaagcataactgagagtgtg
ggggaaatgggctgggccatctgcgaaactaaatatgatgggataagggttcaaattcac
cggcatggtgataaaatagatattttcaccagaaggctggaaaatatcagcctggcactt
cctgaaatctctgactacattgaaaaatcccttccacacgaggatttcattgtggagggt
gaaataatcgccagtcgggatggtaaacccatatcattccagtacatgctgcaaagagtg
cgtaggaaatatgaaatcgataaaatggtttctaaaatccctttaactgtttatctattt
gatgtgctctattatcataggcccgttcttgatgaacctctccaagaacggagaaaaacc
ttagaatcaatagtaaaagtgttggaaggtaaactagagctttctgcccaggttaaagtc
actctcgaggagatagggaaggctcaggacctctttgaaacatcaattaagggtggtcat
gagggtataatgatcaaagaccctcatgcaccatacatgccaggtataaggggtaagaag
atgctaaaattgaaggcagaaccggaaaccctggatctggtggtggtgggtggaacctac
ggaaatggcaagcgagctcatctcattggatcctatcttatggctcttcaggatgaggac
aaccagctcaagcccctggcttacgctgcaactggtttggatgatcaaacattgttggag
ctttctgaaatggtagaacctctaataatcagtaaaaaaggtaggcaagtgaagatcgaa
ccatccataatcatggaaattgccttcagtgaaatagtggaaagcccggaatccgaaaca
ggatattcactacggttcccggtggttaaaaggattcgtaacgacttagggttggatgag
attgatactctggagagaattgaatcaatcttcaggaactcagagaaaacttga

DBGET integrated database retrieval system