Methanobacterium sp. MZ-A1: BK008_08330
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Entry
BK008_08330 CDS
T05317
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
metn
Methanobacterium sp. MZ-A1
Pathway
metn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BK008_08330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metn03019
]
BK008_08330
03009 Ribosome biogenesis [BR:
metn03009
]
BK008_08330
Enzymes [BR:
metn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BK008_08330
Messenger RNA biogenesis [BR:
metn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BK008_08330
Ribosome biogenesis [BR:
metn03009
]
Prokaryotic type
rRNA helicases
BK008_08330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
Helicase_C_2
Helicase_RecD
AAA_30
UVR
Motif
Other DBs
NCBI-ProteinID:
AUB58318
UniProt:
A0A2H4VJP0
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All DBs
Position
1702967..1704556
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AA seq
529 aa
AA seq
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MESLLFEDLKLSREMKRAIADMGFEEATPIQSLALPHILDGKDVIGQAQTGTGKTAAFGI
PVLENLDSSVKGVQAVILCPTRELAIQVAEEIKKLSKYKKTTVLPVYGGQPIERQIKALK
RGVQIVIGTPGRMMDHIHRRTLKLDQVKMIILDEADEMLDMGFRDDIEFILQQIPHERQM
LLFSATMSREILALTRKYQNKPEMLKVAHQELTVPEIEQIYFEVKEQMKLDVLTRLIDMH
NLKLALVFCNTKRRVDRLVGHLQTRGYFADGLHGDMSQNQRDRVMNKFRKGQIEILVATD
VAARGIDVDDVEAVFNYDVPNNDEYYVHRIGRTGRAGKKGQAFTFVSGKEIYQLRDIQRY
TKVRIEQQKIPSLREVEEVKRDLFLERLRKEIDEGNIDREIHLIERLMEEDYSSVDIAAA
LLKLYVGGKDDSSSSQTSDSKYGETGAQPGMVRFFVNVGRKQKVKAKDIVKAIGEASGLS
STSIGRIDVLEKFSFVELPQQHAREVVGALQRKGIKGLRVNVEPANKKM
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtttattatttgaagatttgaaattatcccgtgaaatgaaacgagccattgct
gatatgggttttgaagaagcaacccctatacaatcactggctttaccccacatattagat
ggtaaggacgttattggccaggcacagaccggaaccggtaaaactgcagcatttggaata
cccgtgctggaaaacctggactcctcggttaaaggtgtgcaagcagtaatcctctgcccc
accagagaactggccattcaagtggcagaagagattaaaaagttatctaaatacaaaaaa
accacagttctacctgtctacgggggacaacccatcgaaagacagattaaagctttgaaa
agaggagtgcagatcgttattgggactccggggaggatgatggatcacatccatcgacgt
acccttaaattagatcaagtcaagatgatcatcttggatgaggccgatgaaatgctggac
atgggtttcagggatgatatagaatttatactacaacagatacctcatgagaggcagatg
ttactattttcagccactatgtctcgggagattcttgctttaaccagaaaataccagaac
aagcctgaaatgctcaaagtagcccatcaggaattaactgttcctgaaatcgaacagatc
tatttcgaagtcaaagaacagatgaaactggatgttctgaccagacttatagatatgcac
aaccttaaacttgcactggtcttctgtaacaccaaaagaagggtagatcgtcttgtaggt
caccttcagaccagaggatactttgctgatggactgcacggagacatgagtcagaaccag
cgggacagagtcatgaataagttccggaagggtcagatagaaatattggtagctactgac
gtggcagcccgaggaatagatgtggatgatgtggaagcagttttcaactacgatgttcct
aacaatgatgagtactatgtccacaggataggtagaaccggccgtgcaggcaagaaggga
caggcattcacctttgtatctggaaaagaaatctaccagttacgggatatccagcgttac
accaaggtcagaattgaacaacagaagatcccatccctccgggaagtggaagaagtcaaa
agagacctgttcctggaaagactccggaaagagatagatgaaggaaatatcgatcgggaa
attcacctgatagaacgattaatggaagaagattacagttcagtggacatagctgctgcc
ctcctgaagctttacgtgggaggaaaggatgattcttcttccagccaaacttctgactct
aaatatggagaaactggagcacaacccggaatggtcagattcttcgtaaatgtgggccgt
aaacagaaagttaaagcaaaggatatagtaaaggcaattggagaagcctcaggactatct
tcaaccagtattggacgtatcgatgttttagaaaagttttcatttgttgaactccctcaa
caacacgcccgagaagtagtcggtgctctgcagagaaaaggaataaaaggactccgggtt
aatgtggaacctgccaataagaagatgtaa
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