Methanobacterium sp. BAmetb5: CIT02_05855
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Entry
CIT02_05855 CDS
T05745
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
meto
Methanobacterium sp. BAmetb5
Pathway
meto03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meto00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIT02_05855 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meto03021
]
CIT02_05855 (rpoB)
Enzymes [BR:
meto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIT02_05855 (rpoB)
Transcription machinery [BR:
meto03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
CIT02_05855 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Zf_2nd_IFT121
RNA_pol_Rpb2_45
DUF5817
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AXV39869
LinkDB
All DBs
Position
complement(1228372..1230183)
Genome browser
AA seq
603 aa
AA seq
DB search
MKKCKVYSNGKLIGTCDDPEGFIEEMRQKRRSGEVSYETNITHYPENNEIYIFNDPGRTR
RPLIVVENGGSRLTDEHFQKIADGEMAWLDLINEGIIEYLDAEEEENTYIAMFPDEINEY
HTHLEIDPSTMLGICAGIIPYANHNSSPRNTMEAGMTKQALGLYVSNYHLRTDTRAHLLH
QPQVPIVKTRSMDATQYDKRPSGQNFVVGVMSYEGYNMEDALILNKASLERGLARSSFFR
SYEASERRYPGGQEDKFEVPENMVRGYRSEEVYRNLDEDGIVNPEVSVKSGDVLIGKTSP
PRFLEEIDEFGTVAERRRETSVTVRHGEHGVVDAVMLTETVEGSKLAKIRVRDQRQPEFG
DKFASRHGQKGVVGLIVSQENMPFTAEGVVPDLIVNPHAIPSRMSVGQVLEMLAGKAGCM
EGHRMDGTPFSGTHEHEVMELLKANGFETAGRESLYNGITGERIEAEIFIGVAYYQKLHH
MTSDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDK
YEAIICGECGMVAIYDRIRDKTYCPICGDSDSYPVEISYAFKLLLDELKSLCIFPKLVLE
DKA
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaaatgcaaggtttatagtaacgggaaacttattgggacttgtgatgatccagaa
ggtttcatagaagagatgcgccagaaaaggagatctggagaagtatcttacgaaaccaac
atcacccattaccctgagaacaacgagatatatatattcaatgacccgggaagaacccga
agaccactgattgtggtggaaaacggcgggtcacgcttaacagatgaacattttcagaaa
attgctgatggagaaatggcatggttggatctgataaatgaaggaattatcgaatacctc
gatgctgaggaagaagaaaacacctacatcgccatgttccctgatgaaattaatgaatac
cacacccacctggagattgatccctccaccatgctggggatctgtgccgggatcataccc
tacgccaaccacaactcatccccccgtaacaccatggaagccgggatgaccaaacaggca
ttgggactttacgtttctaattatcacttaaggacagacacccgtgcacacctgctgcac
cagccacaagtacccatagtcaaaaccagaagtatggatgccacccagtacgataaacga
ccatccggtcagaacttcgtggtgggagtaatgtcctacgagggatacaacatggaagat
gctctcatactgaacaaggcatccctggaaaggggactggcccgatcatcatttttcaga
tcctacgaggcttccgaacgccgatatcccggaggacaggaagacaaattcgaagtacca
gaaaacatggtacgtgggtaccgttccgaagaagtgtaccgcaacctggatgaagatgga
attgtcaatcccgaagtcagtgtgaaatcaggtgatgtcctcataggaaaaacatcccca
cctcgtttcctggaagaaatcgacgaattcggaacagtggcggaacgaagaagagaaacc
tcagtcaccgtacgacacggagaacacggagtggtagatgcagtaatgctcaccgaaaca
gtagaaggaagcaaactggccaaaatacgagtaagagaccagagacaaccagagttcggg
gataaattcgcatcccgtcacggacagaaaggagtggtgggactcattgtgtctcaggaa
aacatgcccttcacagctgaaggagtagttcctgacctaatcgtaaatccacacgctatt
ccctccaggatgtccgtggggcaagtgttggagatgctggcaggtaaagctggctgcatg
gaaggacaccgtatggatggaacaccattcagtggaacccacgaacacgaggtaatggaa
ctcttgaaggctaatggctttgaaactgcaggccgggaatcactctacaatggaatcacc
ggtgaacgaatcgaagcagaaatattcattggagtggcttactaccagaaactgcaccac
atgacctcagataaagtatacgcccggtcaaggggaccggtacaagttctaacccgacag
cccaccgagggaagagctcgagaaggaggtctcaggttcggagaaatggaaagagactgc
cttatagctcacggggctgcactagcactcaaagaaagacttttagatgaatctgataaa
tatgaggccataatatgtggtgaatgtggaatggttgccatatatgaccggataagagat
aaaacctactgtcccatatgtggagactcggacagttacccggtggaaatatcatacgca
tttaaactattattggacgaactcaagagcctgtgtatcttccccaaactggttcttgaa
gacaaagcctga
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