Methylibium sp. Pch-M: C1M51_02445
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Entry
C1M51_02445 CDS
T05827
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
metp
Methylibium sp. Pch-M
Pathway
metp03420
Nucleotide excision repair
metp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
metp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1M51_02445
03430 Mismatch repair
C1M51_02445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
metp03400
]
C1M51_02445
Enzymes [BR:
metp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1M51_02445
DNA repair and recombination proteins [BR:
metp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1M51_02445
MMR (mismatch excision repair)
Other MMR factors
C1M51_02445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
AAA_12
DUF4777
Motif
Other DBs
NCBI-ProteinID:
QAZ38369
LinkDB
All DBs
Position
complement(527960..530326)
Genome browser
AA seq
788 aa
AA seq
DB search
MDVSVENDRAFPGEAAGLLRHLNPEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLVQ
TGQVSPAGVMAVTFTNKAAKEMLTRLSTLLPVNPRGMWIGTFHGLCNRFLRAHWKLAGLP
QGFQILDAQDSVSAVKRIVKAMKLDEERYIPKQCAWFIAGAKEDGLRPQHIEVRDELTRT
QQAIYQAYEDQCQREGVVDFAELMLRTYELMRDHAELRQHYQRRFRHILVDEFQDTNRLQ
YAWLKMFAGTDNNVLAVGDDDQSIYAFRGARVGNMADFEREFHVQQVVKLERNYRSFGNI
LDSANALIAHNSRRLGKNLRTEAGPGEPVRVFEATSDFAEAQWFLDEARQLQRDGSPRSE
IAVLYRSNAQSRVIESALFNAGVPYRVYGGLRFFERAEIKHALAYLRLIENPNDDTSFLR
VVNFPTRGIGARTMELLQDAARSSGRSLWQSVGAIAGKGGSNLGAFTVLVDAMREATRGL
TLREIIEHVVQASGLADFYRNEKEGAERLENLDELVNAAEAFVTQEGFGKDAVALPVDEQ
AGRIAEGLPAAVALVDTQPDVETGEIMSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHA
AKGLEFDQVFITGLEEGLFPHENAAADLDGLEEERRLMYVAITRARKRLYLSFSQTRMLH
GQTRYNLKSRFFDELPEAALKWLTPKLQGFGSGYARDYQAAWQRGSGLGSMVGAGRVVPA
SAPAAFEAQARSTPNGLRSGQGVFHTKFGEGVIVTLEGLGADARAQVNFGRHGMKWLALS
VAKLTPVD
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgtcagttgaaaacgatcgtgcgttcccgggcgaagccgctggcctgctgcgc
cacctgaaccccgagcagctcgccgcggtcacgctgccggcgggcaatgcactgatcctc
gcgggtgccgggtccggcaagacgcgggtgctgacgacgcgcatcgcctggctggtgcag
accggccaggtctccccggccggcgtgatggcggtgaccttcaccaacaaggccgcgaag
gagatgctcacgcgactctccacgctgctgccggtgaacccgcgcggcatgtggatcggt
accttccacggcttgtgcaaccgcttcctgcgcgcgcactggaagctggcaggcctgccg
cagggcttccagatcctcgacgcgcaggacagcgtctcggcggtcaagcgcatcgtcaag
gcgatgaagctcgacgaggagcgctatatccccaagcagtgcgcgtggttcatcgccggc
gccaaggaagacggactgcgcccgcagcacatcgaggtgcgcgacgagctcacccgcacg
cagcaggccatctaccaggcctacgaagaccagtgtcagcgcgagggcgtggtcgacttc
gccgagctgatgctgcgcacctacgagctgatgcgcgaccacgccgagctgcgccagcac
taccagcggcgcttccgccacatcctggtcgacgagttccaggacaccaaccgcctgcag
tacgcgtggctgaagatgttcgccggcaccgacaacaacgtgctcgccgtcggcgacgac
gaccagagcatctatgccttccgcggcgcgcgtgtcggcaacatggccgacttcgagcgc
gagttccacgttcagcaggtcgtgaagctcgagcgcaactaccgcagcttcggcaacatc
ctcgacagcgccaacgcgctgatcgcgcacaactcgcgccgtctgggcaagaacctgcgc
acggaggccggtcccggcgagccggtgcgcgtgttcgaggccaccagcgatttcgccgag
gcgcagtggttcctcgacgaggcgcgccagctgcagcgcgacggatcgccgcgcagtgag
atcgcagtgctctaccgcagcaatgcgcagagccgggtgatcgagagcgcgctgttcaac
gccggtgtgccctaccgcgtctatggcggcctgcgcttcttcgagcgtgccgaaatcaag
cacgcgttggcctacctgcggctgatcgaaaatccgaacgacgacaccagcttcctgcgc
gtcgtcaacttccccacgcgcggcatcggcgcccgcacgatggagctgctgcaggacgcc
gcgcgcagcagtggccgcagcctctggcagagcgtgggggcgatcgccggcaagggtgga
tcgaacctcggcgccttcaccgtgctggtcgatgcgatgcgcgaagcgacgcgcggcctc
acgttgcgcgagatcatcgagcacgtggtgcaggcctccgggttggccgacttctaccgc
aacgagaaggaaggcgccgagcggctggagaacctggacgagttggtcaacgccgccgag
gccttcgtcacgcaggaaggcttcggcaaggacgccgtggcgctgccggtcgacgaacag
gccggccgcatcgccgagggtctgccggccgcagtggccctggtcgacacccagcccgat
gtcgagaccggcgagatcatgagcccgctcgcggcctttctcacccacgccgcgctcgag
gccggcgacaaccaggcgcaggccggccaggacgccgtgcagctgatgacggtgcacgcc
gccaagggcctggagttcgaccaggtcttcatcaccggcctggaggaaggcctgttcccg
cacgagaacgcggcggccgacctcgacggtctggaagaggagcgccggctgatgtatgtg
gccatcacgcgcgcgcgcaagcggctctacctgagcttcagccagacccgcatgctgcac
ggccagacccggtacaacctcaagagccgcttcttcgatgaactgcccgaggccgcgctg
aagtggctgacgccgaagctgcagggcttcggctcgggctacgcccgcgactaccaggcc
gcgtggcagcgcggctcggggctgggctcgatggtgggcgcgggacgtgtcgtgcctgct
tcggcgccggccgccttcgaagcccaggcgcgcagcacgccgaacgggctgcggtccggc
cagggcgtgttccacaccaagttcggcgagggcgtgatcgtgacgctcgagggccttggg
gccgatgcgcgggcccaggtcaacttcggccgccatgggatgaagtggctggcgctgagc
gtcgcgaagctgacgccggtcgattga
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