Methylibium sp. Pch-M: C1M51_03290
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Entry
C1M51_03290 CDS
T05827
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
metp
Methylibium sp. Pch-M
Pathway
metp03410
Base excision repair
metp03430
Mismatch repair
metp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
metp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C1M51_03290 (recJ)
03430 Mismatch repair
C1M51_03290 (recJ)
03440 Homologous recombination
C1M51_03290 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
metp03400
]
C1M51_03290 (recJ)
DNA repair and recombination proteins [BR:
metp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C1M51_03290 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C1M51_03290 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C1M51_03290 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
Motif
Other DBs
NCBI-ProteinID:
QAZ38528
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Position
700234..701979
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AA seq
581 aa
AA seq
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MQITVRDVPPRTAWSLEQAGVSPLLARLFAARGITAAEQLDDSLALLLPPNALQGAADAA
RLLADATQQRRRIVVVADYDCDGATACAVALRGLRLLGAAPETLGYVVPDRQVHGYGLTP
AIVDLAFGVFGGPAPEVLVTVDNGIASLDGVAHAKARGLQVLVTDHHLPALQDGRVVLPA
ADVIVNPNQPGCPFESKALAGVGVMFYVLLALRSELRSRGTFDAAAQPRLDALLDLVALG
TVADVVKLDANNRRLVAQGLRRIRSGRMQPGVRALFDAAARDPARASGFDFGFALGPRLN
AAGRMENMTLGIECLLTDDAARATALAQQLDAINRERREVESGMREQAEAMLEALVARDD
HMAGAGDPPPALAIYDPGFHEGVVGIVASRLKDRSHRPTFVFARGQDGQLKGSGRSIPGF
HLRDALDLVSKRHPGLLRRFGGHAMAAGATLAEADFALFERALVQVAGEWLDAAALQRTL
RTDGSLGAEHFNADTVRALEAQVWGQAFEPPVFSDRVEVVSQRLVGEKHLKLSVRHGGML
RDAIWFGHAEPLAEQVTLAYQLRLDEFNGRQRVQMVVEAAL
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcaccgtccgcgacgtcccgccccgcaccgcctggtcgctcgaacaggccggc
gtgtcaccgctgctcgcacggctgttcgcggcgcgcggcatcaccgcggccgagcagctc
gacgattcgctcgccctgctgcttccgcccaatgcgctgcagggagcggccgatgcggcc
cgcctgctggccgatgcgacgcagcagcgccggcgcatcgtcgtcgtcgccgactacgac
tgcgacggcgcgaccgcctgtgcggtggccctgcgcgggctgcgcctgctcggcgccgcg
cccgagaccctgggctacgtggtacccgaccgacaggtgcatggctacgggctcacgccg
gcgatcgtcgacctggccttcggcgtgttcggaggcccggcgccagaggtgctggtgacg
gtggacaacggcatcgccagcctcgacggcgtggcgcacgccaaggcccgcggcctgcag
gtgctggtgaccgaccaccacctgccggcgctccaggacggccgcgtcgtgctgccggcg
gccgacgtgatcgtcaaccccaaccagcccggctgcccgttcgagagcaaggcgctggct
ggcgtcggcgtgatgttctacgtgctgctggcgctgcgcagcgaacttcgctcgcgcggc
acgttcgacgccgccgcgcaaccccggctcgacgcgctgctggacctggtggcgctgggc
accgtggccgacgtggtgaagctcgacgcgaacaaccgccgcctcgtggcgcaggggctg
cggcgcatccgcagcgggcgaatgcagccgggcgtgcgcgcgctgttcgacgcagcggcc
cgcgacccggcccgcgccagcgggttcgacttcggcttcgcgctcgggccgcgcctcaac
gcggccggccgcatggagaacatgacgctgggcatcgaatgcctgctgaccgacgacgcc
gcccgcgccaccgcgctggcgcagcagctcgacgcgatcaaccgcgagcgccgcgaggtc
gagagcggcatgcgcgagcaggccgaagcgatgctcgaggcgctggtcgcacgcgacgat
cacatggccggggccggcgacccgccgcccgcgctggcgatctacgaccccggtttccac
gagggcgtggtcggcatcgttgcctcgcgcctgaaggaccgcagccaccgcccgaccttc
gtgttcgcgcgcggccaggacgggcagctgaagggctccggccgctcgatccccggcttc
cacctgcgcgatgcgctcgacctcgtcagcaagcgccaccccggactgctgcgccgcttc
ggcggccacgcgatggcggccggcgccacgctggccgaggccgacttcgccctcttcgag
cgcgcgctggtccaggtggccggcgaatggctggacgccgcggcgctgcagcgcacgctg
cgcaccgacggctcgctgggcgccgagcacttcaacgccgacaccgtgcgggcgctcgag
gcccaggtgtggggccaggccttcgaaccgccggtgttcagcgaccgcgtcgaggtggtc
tcgcagcggctggtgggcgagaaacacctgaaactctcggtacgccacggcggcatgctg
cgtgacgccatctggttcggccacgccgagccgctggccgagcaggtgacgctggcctac
cagctgcggctggacgagttcaacgggcggcagcgcgtgcagatggtggtcgaggcagcg
ctctga
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