Methylibium sp. Pch-M: C1M51_05615
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Entry
C1M51_05615 CDS
T05827
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
metp
Methylibium sp. Pch-M
Brite
KEGG Orthology (KO) [BR:
metp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metp03016
]
C1M51_05615
Enzymes [BR:
metp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C1M51_05615
Transfer RNA biogenesis [BR:
metp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
C1M51_05615
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QAZ38951
LinkDB
All DBs
Position
1198933..1200990
Genome browser
AA seq
685 aa
AA seq
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MSDTYALFEEAGKFLAGRVMSEAESSLQVELDSGKRVKVKSANALLRFAKPAPAELLAQA
HSLSGEIDLDLIWEVAPDEEFGFDDIAREYFNAHPDAPQRAATLLRLFDAPHYFHRRGKG
RFRKAPEDILKQALVAIERKAQQAAQIESWAVELAGGHCPAPITEQLYRILFKPDKNGPE
YKAVVEAAKRSHKAPLDLLKDAGAITSPYQFHWKRFLFEFFPKGTAFPPLQAPPIKNDLP
PAAVQAFSIDDSSTTEIDDALSVQGLGSDTVVFGVHIAAPGLAVLPGSAVDQVARTRWST
VYMPGHKLTMLPDEVVQSYTLLEGRDCPAVSVYFSLDAASLAVKAVETKLEQVTIAANLR
HDQLDAVVTEPTLTGEAPADYAFAPELAFAFRLARYLKAQRELVRGKPENFNRPDYNFRL
DGGNAGEPDGSETVVITERKRGSPLDLIVAEAMILANSHWGGWIAECGVPGIYRSQASMA
PGIKVRMGTKPAPHAGMGVKQYTWATSPLRRYVDLVNQWQIIACARHGRTAALAAPFKPK
DAELFSVISGFDAAYTAYNQFQNGLERYWTMRHLEQAGLTELEAAVMKDGLVRADTLPLV
FRALGCESLPRGARVRVRITGTDLLTLELHASLVTRLDDPATPADDAPVDAEEADEAAEA
AAPLALAIDLQDGDNAADPAPSGAA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatacctacgccctgttcgaagaagccggcaagttcctcgccggccgtgtgatg
tccgaggccgagagctcgctgcaggtggagctcgattccggcaagcgcgtcaaggtcaag
agcgccaacgcgctgctgcgttttgcgaaacctgcgccagccgagctgctggcgcaggcg
cacagcctgtcgggcgagatcgacctcgacctcatctgggaggtcgcgccggacgaggag
ttcggcttcgacgacatcgcccgcgagtacttcaatgcccaccccgacgcgccgcagcgc
gcggccacgctgttgcggttgttcgatgcgccgcactacttccatcggcgcggcaaggga
cgcttccgcaaggcgccggaagacatcctgaagcaggccctggtggcgatcgagcgcaag
gcgcagcaggccgcgcagatcgagtcctgggcggtcgagctggccggcggccactgcccg
gcgccgatcaccgagcagctctaccgcatcctgttcaagcccgacaagaacggccccgag
tacaaggccgtggtcgaggccgcgaagcgctcgcacaaggcgccgctcgacctgctgaag
gacgccggcgcgatcaccagcccctaccagttccactggaagcgcttcctgttcgagttc
ttccccaagggcacggcctttccgccgctgcaggcgccgccgatcaagaacgacctgccg
ccggcggcagtgcaggccttctcgatcgacgactcgagcaccaccgagatcgacgacgcc
ttgtcggtgcaggggctgggcagtgacaccgtcgtgttcggcgtgcacatcgccgcgccg
ggcctggcggtcctgccgggctcggccgtcgaccaggtggcgcgcacgcgctggtccacc
gtctacatgccgggccacaagctgaccatgctgcccgacgaggtggtgcagagctacacg
ctgctcgaagggcgcgactgcccggcggtgtcggtgtacttcagcctcgatgcggcgtcg
ctggccgtgaaggcggtggaaacgaagctggagcaggtgacgatcgccgccaacctgcgc
cacgaccagctcgacgcggtggtcaccgaacccacgctgaccggcgaggcgccggccgac
tacgccttcgcgcccgagctcgcgttcgctttccgcctggcccggtatctgaaggcgcag
cgcgagctggtgcgcggcaagcccgagaacttcaaccggccggactacaacttcaggctc
gacggagggaacgccggcgagcccgacggcagcgagacggtcgtcatcaccgaacgcaag
cgcggttcgccgctggacctgatcgtcgccgaggcgatgatcctcgccaacagccactgg
ggcggctggatcgccgagtgcggcgtgccgggcatctaccgcagccaggccagcatggcg
cccggcatcaaggtgcgcatgggcaccaagccggcgccgcatgcgggcatgggcgtcaag
cagtacacctgggccacctctccgttgcggcgctacgtggacctggtcaaccagtggcag
atcatcgcctgcgcgcggcacggccgcaccgcggcgctggccgcaccgttcaagcccaag
gacgccgagctgttctcggtcatctcgggcttcgacgccgcgtacacggcctacaaccag
ttccagaacgggctggagcgctactggacgatgcgtcacctcgagcaggcaggcctgacc
gagctggaggccgcggtgatgaaggacgggctggtccgcgccgacacgctgccgctggtg
ttccgggccctcggctgcgagtcgctgccgcgcggagcccgggtgcgggtgcgcatcacc
gggaccgatctgctcacgctggagctgcacgccagcctcgtcacccggctcgacgatccg
gcgacgccggccgacgatgcgccggtcgatgccgaggaggccgacgaagcggccgaggct
gccgcgccgctcgcgctggcgatcgacctgcaggatggcgacaatgccgccgacccggcc
ccctccggcgccgcctag
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