Methylibium sp. Pch-M: C1M51_09240
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Entry
C1M51_09240 CDS
T05827
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
metp
Methylibium sp. Pch-M
Brite
KEGG Orthology (KO) [BR:
metp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metp03016
]
C1M51_09240
Enzymes [BR:
metp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C1M51_09240
Transfer RNA biogenesis [BR:
metp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C1M51_09240
Prokaryotic type
tRNA splicing ligases
C1M51_09240
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6511
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QAZ41437
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All DBs
Position
1923612..1924829
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AA seq
405 aa
AA seq
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METNYIHEDVGGGVPLKMWTRGVPVEDAAKRQLENAARLPIVFKHVAAMPDVHFGIGATV
GSVIPTLKAIIPAAVGVDIGCGMIACKTTLTAEDLPDNLGPLRSAIERAVPHGRAPGSRD
PGAWQKAPGSVNTAWAQLEPEFTELCRDYPKLEKTNHIQHLGTLGTGNHFIEVCLDEAGF
VWFMLHSGSRGVGNFIGTMFIELAKQDAMRHQANLPDRDLAYFEEGSRYFGDYVRAVGWA
QKFAAINREVMMKRVIEAAKTVIRKNFQSHVEAVNCHHNYVQKEHHFGEDVYVTRKGAVS
AKTGQLGIIPGSMGARSYIVRGKGNPESFESCSHGAGRVMSRGEAKRRFTLADHRAATEG
VECRKDKDVIDETPAAYKDIDAVMEAQRDLVDVVHTLKQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgaactacatccacgaagacgtgggcggcggcgtgccgctgaagatgtggacg
cgcggcgtgccggtcgaggacgccgccaagcgccagctggagaacgctgcgcgcctgccg
atcgtcttcaagcacgtcgcggcgatgccggatgtgcacttcggcatcggcgccaccgtc
gggtcggtgatcccgaccctcaaggccatcatcccggccgcggtgggcgtggacatcggc
tgcggcatgatcgcctgcaagaccacgctgacggcagaggacctgccggacaacctgggc
ccgctgcgttcggcgatcgaacgcgcggtgccgcacggccgtgcgccgggctctcgcgac
ccgggcgcgtggcagaaggcgccgggctcggtgaacaccgcgtgggcgcagctcgagccg
gagttcaccgaactctgccgcgactacccgaagctggagaagaccaaccacatccagcac
ctgggcacgctgggcaccggcaaccacttcatcgaggtctgcctcgatgaagcgggattc
gtctggttcatgctgcactcgggctcgcgcggcgtcggcaacttcatcggcacgatgttc
atcgagctggccaagcaggacgcgatgcgccatcaggcgaatctgccggaccgcgacctg
gcctacttcgaggaaggcagccgctacttcggcgactacgtgcgcgcggtgggctgggcg
cagaagttcgcggcgatcaaccgcgaggtgatgatgaagcgcgtgatcgaagccgcgaag
acggtgatccgcaagaacttccagagccacgtcgaggcggtgaactgccaccacaactac
gtgcagaaggagcatcacttcggcgaagacgtgtacgtgacccgcaagggcgcggtcagc
gcgaagaccgggcagctgggcatcatccctggcagcatgggcgcgcgcagctacatcgtg
cgtggcaagggcaacccggagtcgttcgagtcgtgctcgcacggcgccgggcgtgtcatg
agccgcggcgaggccaagcgccgcttcacgctggccgaccaccgcgccgccaccgaaggc
gtcgaatgccgcaaggacaaggacgtcatcgacgaaacgcccgcggcctacaaggacatc
gacgccgtgatggaagcgcagcgcgacctggtcgacgtggtgcacacgttgaagcaggtg
gtgtgcgtgaagggctga
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