Methylibium sp. Pch-M: C1M51_09730
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Entry
C1M51_09730 CDS
T05827
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
metp
Methylibium sp. Pch-M
Pathway
metp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1M51_09730 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metp03019
]
C1M51_09730 (recQ)
03400 DNA repair and recombination proteins [BR:
metp03400
]
C1M51_09730 (recQ)
Enzymes [BR:
metp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1M51_09730 (recQ)
Messenger RNA biogenesis [BR:
metp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1M51_09730 (recQ)
DNA repair and recombination proteins [BR:
metp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1M51_09730 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QAZ41446
LinkDB
All DBs
Position
complement(2025226..2027100)
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AA seq
624 aa
AA seq
DB search
MPATDPLNVLQEVFGYTAFRGHQAEIVDHVSAGGDALVLMPTGGGKSLCYQVPAIARHRA
GHGVAVVVSPLIALMHDQVGALEEAGVHAAFLNSSLELADVQRIEREMMSGRLVLLYAAP
ERLTTPRMLAQLDSLHERGLLSLFAIDEAHCVSQWGHDFREDYLGLHVLHERYADVPRIA
LTATADEHTRADIVSRLQLEDARVFISSFDRPNIRYRVVEKDDPRKQLLRFIGDEHEGEA
GIVYCQSRKKVDETAAWLETEGITALPYHAGLDAAVRQRHQNRFLREDGIVMVATIAFGM
GIDKPDVRFVAHLDLPKNIESYYQETGRAGRDGEPAEAWMAYGLADVVNQRRMIDDSPAG
EEFKRAQRGKLDALLALAEAHDCRRVRLLDYFGEPSRSCGNCDNCLNPPAVWDATEAARK
LLSCVYRFGQHGRGPRSFGAGHLIDVLRGKATEKVAQYGHDGLSTFGVGADLSEQQWRGV
LRQLVALGHVVSEGEYNTLALTDGARAVLKGEVQLLLRVPSDTPKRGRLARGGGSTGRGA
KGSGAPADLDAAAQVRFEALRAWRGEVAREHNLPTYIIFSNATLAEMARRAPATLGDLGE
VSGVGAKKLEAYGREILRVLDAGR
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
ctgcccgccaccgacccgctgaacgtgctgcaggaggtgttcggctacaccgccttccgc
ggacaccaggccgagatcgtcgaccacgtgagcgccggcggcgacgccctggtgctgatg
cccaccggcggcggcaagagcctgtgctaccaggtgccggcgatcgcgcgccaccgcgcc
ggccacggcgtggccgtggtggtgagcccgctgatcgcgctgatgcacgaccaggtcggc
gcactcgaggaagccggcgtgcatgcggccttcctgaactcctcgctcgaactcgccgac
gtgcagcgcatcgagcgcgagatgatgagcggccggctggtgctgctgtacgccgcgccg
gagcgcctgaccacgccgcgcatgctggcgcagctggattcactgcatgagcgcggcctg
ctgagcctgttcgcgatcgacgaggcgcactgcgtgagccagtggggccacgatttccgc
gaggactacctgggcctgcacgtgctgcacgagcgctatgccgacgtgccgcgcatcgcg
ctcaccgccacggccgacgaacacacgcgcgccgacatcgtgtcgcgcctgcagctcgag
gacgcgcgcgtcttcatcagcagcttcgaccggccgaacatccgctaccgcgtggtcgag
aaggacgacccgcgcaagcagctgctgcgcttcatcggcgacgagcacgagggcgaggcc
ggcatcgtgtactgccagtcgcgcaagaaggtcgacgagaccgcggcctggctcgagacg
gaaggcatcaccgcgctgccctaccacgccgggctcgacgccgcagtgcggcagcggcac
cagaaccgcttcctccgcgaggacggcatcgtgatggtcgcgaccatcgcgttcggcatg
ggcatcgacaagcccgacgtgcgcttcgtcgcccacctcgacctgccgaagaacatcgag
agctactaccaggagaccggccgcgccggccgcgacggcgagcccgccgaggcctggatg
gcctacggcctggccgacgtggtgaaccagcgccgcatgatcgacgacagcccggcgggc
gaggagttcaagcgcgcccagcgcggcaagctcgacgcgctgctggcgctggccgaggcg
cacgactgccgccgcgtgcggctgctcgactatttcggcgagcccagtcggtcctgcggg
aattgcgacaactgcctgaacccgccggcggtgtgggacgccaccgaggcggcgcgcaag
ctgctgtcctgcgtctaccgcttcgggcagcacggccgcgggccgcgcagcttcggcgct
ggccacctgatcgacgtgctgcgcggcaaggccaccgagaaggtcgctcagtacggccac
gatggcctgtcgaccttcggcgtcggcgccgacctgtccgagcagcaatggcgcggcgta
ctgcgccagctggtcgcgctgggccacgtggtgtccgagggcgaatacaacacgctggcg
ctgaccgacggcgcgcgcgcggtgctcaagggcgaggtgcagttgctgctgcgcgtgccg
agcgacacaccgaagcgcggacgcctcgcccgcggcggtggcagcaccggccggggagcg
aagggcagcggcgcgccagccgatctggacgccgccgcgcaggtccgcttcgaggccttg
cgcgcctggcgcggcgaggtggcgcgcgagcacaacctgcccacctacatcatcttctcg
aacgccacgctggccgagatggcacgccgcgcgccggccacgctgggcgacctgggcgag
gtcagcggggtcggcgcgaagaagctcgaggcctacgggcgcgagatcctgcgggtgctg
gacgcggggcgctga
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