Methylorubrum sp. GM97: MSPGM_09190
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Entry
MSPGM_09190 CDS
T10720
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
metq Methylorubrum sp. GM97
Pathway
metq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSPGM_09190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metq03019
]
MSPGM_09190
Messenger RNA biogenesis [BR:
metq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSPGM_09190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BDL38329
LinkDB
All DBs
Position
complement(990301..991974)
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AA seq
557 aa
AA seq
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MTTRQDELVFVPLGGVGEIGMNAGLYGIGPEKQRKWIMVDCGMGFAGEEGLPGIDLMFPD
LTFIEERKKDLLAIFITHAHEDHIGAISELWPRIKAPVYATRFAKNLLETRRLSEPGAPK
VDLREIKPGRRVTVGPFEIEFVPVAHSIPESNAVAIRTEHGLVLHTGDWKLDDTPVAGDS
TSPEAFTALGDEGILALICDSTNVLREGRSPSESEVSATLHKLIENAPHRVAVTTFASNV
ARIRAVAEAAQACGRQVIAVGRAMDRVIDVARECGYLDGLPDFLAAESYSHIPRDKVVCL
LTGSQGEPRAAMSRVSRHDHPAISLTAGDRVIFSSRAIPGNERDVGSIINDLIEDGIEVI
TDRTELVHVSGHPRREEMVTMYSWTRPKAVVPVHGEALHLDEHARFARSQGVESVVKARN
GAVVRLAPGKPEVVEHVRAGRLYKDGNVLIDSKDRAIPERRKLSQTGIVSVAIAIDERGE
VIGDPAVDIMGLPNRGRTGEPLLDTVVDTVNRTLNGLPRGKMKDSEAVENAVDRAVRSAV
NEAWGKKPACHVQVVEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacgacacggcaggacgaactcgtcttcgtgccgctcggcggcgtgggcgagatcggc
atgaatgcgggcctctacgggatcggacccgagaagcagcgcaaatggatcatggtcgat
tgcggaatgggctttgccggcgaagagggattgcccggcatcgacctgatgttccccgat
ctcaccttcatcgaggagcgcaagaaggaccttctcgccatcttcatcacccacgcgcac
gaggaccatatcggcgcgatctccgagctgtggccgcgcatcaaggcgccggtctacgcc
acgcggttcgccaagaacttgctcgagacccgccgtctctccgagcccggcgcgccgaag
gtggatctccgcgagatcaagccgggccgtcgggtgaccgtcgggccgttcgagatcgag
ttcgtgcccgtggcccactcgatcccggaatcgaacgcggtggcgatccgcaccgagcac
ggccttgtgctccacaccggcgactggaagctcgacgacaccccggtggccggcgactcg
acgtcccccgaggcgttcacggctttgggcgacgagggcatcctcgcgctcatctgtgac
tccaccaacgtgctgcgcgagggccgctcgccgagcgagtccgaggtctccgcgaccctg
cacaagctgatcgagaacgcgccccaccgcgtggcggtgacgaccttcgccagcaacgtc
gcgcgtatccgtgccgtggcggaagccgcgcaggcctgcgggcgtcaggtgattgccgtc
ggccgcgccatggatcgggtgatcgatgtcgcccgcgagtgcggctacctcgacgggctg
ccggatttcctcgcggccgagtcctactcccacatcccgcgcgacaaggtggtctgcctg
ctcaccggctcgcagggcgagccgcgggcggcgatgtcgcgggtctcgcgccacgaccat
ccggcgatctcgctcacggccggcgaccgggtgatcttctcgtcgcgcgccatccccggc
aacgagcgcgatgtcggctccatcatcaacgacctgatcgaggacggcatcgaggtcatc
accgaccgtaccgaactcgtccacgtctccggccatccccgccgcgaggagatggtgacg
atgtattcctggacacggccgaaggcggtcgttccggtgcacggcgaggcgctgcatctc
gacgagcatgcgcgctttgcccgttcgcagggcgtcgagtcggtagtgaaggcccgcaac
ggcgcggtggtccgcctcgcgccgggcaagccggaggtggtcgagcacgtccgcgccggg
cggctctacaaggacggcaacgtcctcatcgactccaaggaccgggcgatccccgagcgg
cgcaagctctcgcagaccggcatcgtctcggtggccatcgccatcgacgagcgcggtgag
gtgatcggcgatccggcggtcgacatcatgggcctgcccaatcgcggccggaccggcgaa
ccgctgctcgacactgtggtcgatacggtcaaccgcaccctcaacggtctgccgcgcggc
aagatgaaggattcggaggccgtcgagaacgcggtcgatcgcgccgtgcgctccgccgtc
aatgaggcctggggcaagaagcccgcctgccacgtgcaggtggtggaggtgtga
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