Methylorubrum sp. GM97: MSPGM_23620
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Entry
MSPGM_23620 CDS
T10720
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
metq Methylorubrum sp. GM97
Pathway
metq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSPGM_23620 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metq03019
]
MSPGM_23620 (rnr)
03016 Transfer RNA biogenesis [BR:
metq03016
]
MSPGM_23620 (rnr)
Enzymes [BR:
metq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MSPGM_23620 (rnr)
Messenger RNA biogenesis [BR:
metq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSPGM_23620 (rnr)
Transfer RNA biogenesis [BR:
metq03016
]
Prokaryotic type
tRNA degradation factors
MSPGM_23620 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BDL39772
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All DBs
Position
2563425..2565791
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AA seq
788 aa
AA seq
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MARRINPTAGTPVLPSREQILAFVAETPGKVGKREIAKAFGISGADKIGLKAILKEIEAE
GALERDRGGLRKSGSLPPVVLADIVSRDRDGDLIARPAQWDGEGEAPKIAVETPRAGRNG
NRPAPGIGDRALVRVAPDPEAPGRYTGRVIKVIGKNRSEVIGVYRAGRDGGRLLPVEKKS
QGKEIAIPPGEEGEARDGDLVSVAVERETRFGLPRGRVTERLGALGSEKAVSLIALHIHN
IPHVFPSAVLAEADAAKRATKRGREDWREAPLVTIDPPDAKDHDDAVMAEADPDPANTGG
FIVTVAIADVAAYIRPDSALDREALLRGNSVYFPDRVVPMLPERISNDLCSLREGEDRPA
LAVRMIIGADGVKRSHSFHRILMRSHAKLAYAQAQAAIDGRPDEKSGPVLETALRPLYAA
YEAMKRARDARGPLALDLPERKVLLDAEGGVDRVIVPERLEAHRLIEEFMIQANVAAAET
LEKAGSPLIYRVHDEPALEKMRALGEVLASVGVKMTKAGALRPDLFNRILAQVAESEHAP
FINEVVLRSQAQAIYAAQNLGHFGLNLRRYAHFTSPIRRYADLIVHRALVRACGLGRDGL
PDDTTPGMLDAVSEQISAAERRAMAAERETIDRLIAGYLADRVGATFSGRISGVTRSGLF
VKLAETGADGFVPVSTIGHEYYRHDEALHALVGDRSGETYRLGDTVEVRLVEAAAVAGAL
RFEILSEGRSRSGAKGGGIKRSGSKASPGKAKLGKAKFGAKSPKGKPRPGKAAASESDTA
RRHRGSRR
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
ttggccagacgcatcaatccgacggcgggcacccccgttcttccctcccgcgagcagatc
ctcgccttcgtcgccgagacgcccggaaaggtcggcaagcgcgaaatcgccaaagccttc
ggcatctcgggcgccgacaagatcggcctcaaggcgatcctgaaggagatcgaggccgag
ggcgcgctcgagcgcgaccgcggcggcttgcggaaaagcggcagcctgccgccggtcgtg
ctcgccgacattgtgtcgcgcgaccgcgacggcgacctgatcgcccgcccggcgcagtgg
gacggggagggcgaggcgcccaagatcgccgtcgagaccccgcgtgccggccgcaacggt
aaccgccccgcccccggcatcggtgatcgggcgctggtccgtgtcgcgccggacccggaa
gcgcccggccgctacaccggccgcgtcatcaaggtgatcggcaagaaccgctccgaagtg
atcggcgtctatcgcgccggccgcgatggcgggcgcctgcttcccgtcgagaagaaatcg
cagggcaaggaaatcgcgatcccgccgggcgaggaaggcgaggcccgggatggcgacctc
gtcagcgtcgcggtggagcgcgagacccgcttcggcctgccccgcgggcgcgtcaccgag
cggctcggcgcgctcggctccgagaaggcggtgagcctgatcgcgctgcacatccacaac
atcccgcacgtcttcccctccgccgtgctggcggaggcggatgccgccaagcgtgcgacc
aagcgcggccgcgaggattggcgcgaggcgccgctggtcaccatcgacccgcccgacgcc
aaggaccacgacgacgcggtgatggctgaggccgatcccgatccggcgaatacgggcggc
ttcatcgtcaccgtcgcgatcgcggatgtggccgcctatatccggccggattcggccctc
gaccgcgaggcgctgctgcggggcaattcggtctacttccccgaccgggtggtgccgatg
ctgcccgagcgcatctcgaacgatctctgctcgctgcgcgaaggggaggaccgcccggcg
ctcgccgtgcggatgatcatcggcgccgacggggtgaagcgcagccacagcttccaccgc
atcctgatgcgctcgcacgccaagctcgcctatgcgcaggcgcaggccgcgatcgacggc
cggccggatgagaagtcgggaccggtgctggagacggcgctgcgcccgctctacgcggcc
tacgaggcgatgaagcgggcccgcgacgcccgcggcccgctcgccctcgacctgccggag
cgcaaggtgctgctcgacgcggaaggcggcgtcgatcgggtgatcgtgccggagcgtctt
gaggcgcaccggctgatcgaggagttcatgatccaggccaacgtcgcggcggccgagacg
ctggagaaggcgggctcgccgctgatctaccgggtccacgacgaaccggccctggagaag
atgcgcgcgctcggcgaggtgctcgcctcggtcggcgtcaagatgaccaaggccggtgcg
ctgaggccggacctgttcaaccgcatcctcgcccaggtggccgagagcgagcacgcccca
ttcatcaacgaggtggtgctgcgttcgcaggcacaggcgatctacgctgcacagaattta
ggccatttcggccttaacctgcgccgctacgcccacttcacctcacccatccgccgctac
gcggatctcatcgtccaccgtgctctcgtgcgtgcctgcggattgggcagggacggcctg
ccggacgataccacgccgggcatgctcgacgcggtctccgagcagatctcggcagccgag
cgccgggcgatggcggccgagcgcgagaccatcgaccggctcatcgccggctacctcgcc
gaccgggtcggcgcgaccttctccggccggatctccggggtgacgcgctcggggctgttc
gtgaagctcgccgagaccggggccgacgggttcgtgcccgtctccaccatcggccacgaa
tattaccgccacgatgaggcccttcatgccctcgtcggcgaccgcagcggcgagacttac
cgcctcggcgacacggtcgaggtccgcctcgtcgaggcggcggcggtggccggcgccctg
cgcttcgagatcctgtcggaggggcgcagccgctccggcgccaaaggcggcgggatcaag
cgcagcgggtccaaggcgagtccgggcaaggcgaagttgggcaaggccaagttcggtgca
aagtcgccgaagggcaagccgcgccccggcaaggcggcggcctccgagagcgatacggcg
cggcgccatcgcggctcgcgtcgctga
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