Methylorubrum sp. GM97: MSPGM_36430
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Entry
MSPGM_36430 CDS
T10720
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
metq Methylorubrum sp. GM97
Pathway
metq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSPGM_36430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metq03019
]
MSPGM_36430
03009 Ribosome biogenesis [BR:
metq03009
]
MSPGM_36430
Enzymes [BR:
metq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MSPGM_36430
Messenger RNA biogenesis [BR:
metq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSPGM_36430
Ribosome biogenesis [BR:
metq03009
]
Prokaryotic type
rRNA processing factors
MSPGM_36430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BDL41053
LinkDB
All DBs
Position
complement(3927407..3930547)
Genome browser
AA seq
1046 aa
AA seq
DB search
MANNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRA
EARGARPDDTVKSQEAVSDAGSEDTAIPGEGQAADAPAPEAIEAVRSALVEGRSEERNDE
RSEGDAASAPVEAGGDASASLPEAALEPGTSASEASADEAAAVEPSDIAAISEAPNPPVE
TTESSESAPAEADSAEAETVEPQPVAASAPVSQAEIEEADADSDEDSEADDSDDEDSEDD
ESDDEDEDDDSEDDDSDDEDDDEESEDGEPRVAQVGGSGDALAELPERPRAYRRHYKIQE
VIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAADRKRL
KEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSTAPALVYEEG
SLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFARYGVE
QQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAEEVAR
QVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRISPFGLLEMSRQRI
RTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNVVLRTRTETALYIL
NQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHEGPVTGVRAVAISPVYE
AEEFEDEAVESQETEEVETEVEAEPGGASEERPAADASEEGGGRRRRRRRRRGGRASGEG
EARARDEDGTDSEDGAEDSADDGDNAPDSEPEAVEAALGAAAEPDETASDADANGEDANG
RRRRRGRRGGRGRGRTERNGRSDSEQDSDADEVRTSEESEAHPEETASDTLPVGPEEPFN
DADVSTVSLAAENGAAAEPPPVVPAPELEPIQVESFAEAATEAAAPSPANAEPAPEPVAV
VLTPPDPNRPKRAGWWSRTKAALSGE
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacaagatgctcatcgatgcgatgcatccggaggagacccgggtcgtcaca
gtccaaggctcgcgggtcgaggaatttgatttcgaggcggccaaccgccggcctctgagg
ggcaacatctatctcgccaaggtcacccgcgtggagccctcgctccaggcggccttcgtc
gagtacggcggcaaccgccacggcttcctcgccttcaacgagatccaccccgactactac
cagatcccgatggccgaccgcctcgcgctgatcgaggccgaggcgcgcgaggaagaggag
caccgcgagcgcgaggagcgccgtccgccgcggggccgccgctcgcgtgggcgccgggcc
gaggctcgcggtgcgcgccccgacgacacggtgaagtcgcaagaggcggtgtccgacgca
ggctccgaggacactgcgatccccggtgagggccaggccgccgacgcgcctgcgccggag
gcgatcgaggcggtgcggtccgctctcgtcgaagggcggagcgaagaacggaacgacgag
cggagcgagggcgacgcggcgtccgcaccggtcgaggccggcggcgatgcctccgcgagc
ctgcccgaggcggctttggagcccggcacctccgccagtgaggcgtcggctgacgaagcc
gctgcggtcgagccctccgacatcgccgcgatctccgaggcgccgaacccgcccgtcgag
accacggaatcctccgagtccgcgcccgctgaggccgattccgccgaggcagagacggtc
gagccgcagcccgtcgccgccagcgcgcccgtctcccaggccgagatcgaggaagccgac
gcggattccgacgaggactccgaggctgacgattcggacgacgaggactcggaggatgac
gagtccgacgacgaggatgaggacgacgattccgaggacgacgattcggacgacgaggac
gacgacgaggagtccgaggacggcgagccgcgcgtcgctcaggtcggtggctcgggcgat
gcgctcgccgagctccccgagcgtccgcgcgcctatcgccgccactacaagatccaggag
gtgatcaagcgccgccagatcatcctcgtccaggtcgtcaaggaagagcgcggcaccaag
ggcgcggcgctcaccacctacctgtcgctcgccggccgctactcggtgctgatgccgaac
accggccggggcggcggcatctcgcgcaagatcacctcggccgccgaccgcaagcgcctc
aaggaagtggtcgccgacctcgacgtgccggatgggatggggatcatcctgcgcacggcc
ggtgcctcgcgcaccaagcccgagatcaagcgcgacttcgagtacctgatgcgcctgtgg
gagagcgtgcgcgagctgacgctgtcctcgaccgccccggcgctcgtctacgaggagggc
tcgctgatcaagcgggcgatccgtgacctctacaacaaggatctcgacgaggttctggtc
tccggcgaggacgcctaccgcgaggccaaggacttcatgcggatgctgatgcccggccag
tccaaggtcgtgaagccctaccgcgatccgacgccgatcttcgcccgctacggcgtcgag
cagcagctcgacgcgatgttctcgacccacgtcgccctgcgctccggcggctacctcgtc
atcaacccgaccgaggcgctggtctcgatcgacgtgaactccggccgcgccacccgagag
cacgacatcgaggacaccgcgctcaagacgaacctcgaggcggccgaagaggtcgcccgg
caggtgcgcctgcgcgatctcgccggcctcgtcgtgatcgacttcatcgacatggaggag
aagcgcaacaatcgggcagtggagaagcgcctgaacgaggcgctcaagaacgaccgggcg
cgcatccaggtcgggcggatctcgcccttcggcctgcttgagatgagccgccagcgcatc
cgcaccggcgtgctcgaatcctcctcgatcccctgcgcccattgcggcggctcgggcttc
gtgcgggcgacctcctcggtggcgctgcacatcctgcgctcgatcgaggaagtgctgctc
aagtcggcgagccacaacgtcgtgctgcgcacccgcaccgagacggcgctctacatcctc
aaccagaagcgcgcgcatctcttcgatctcgagcagcgcttctcggtcacgatcaccatc
tccgccgacgaccggctcgtggcgacctccgccttccagctcgaacgcggcgagccggcg
gtgaagcacgagggcccggtgacgggcgtgcgcgccgtggcgatctcgccggtctacgag
gccgaggagttcgaggacgaggcggtcgagagccaggagaccgaagaggtcgagaccgag
gtcgaagcggagcccgggggcgcgtccgaggagcgccccgccgccgatgcgtccgaggag
ggcggtggccgtcgccgccgtcgccgtcgccgtcgcggtggccgcgcctccggtgagggc
gaggcccgcgcgcgggacgaggacgggaccgacagcgaggatggggccgaggacagcgcg
gacgacggcgacaatgcgcccgattccgagccggaggccgtcgaggcggctctcggcgcc
gcggccgagccggacgagaccgcatcagacgccgacgccaacggcgaggacgccaacgga
cgccgccgtcgccgcggacgccggggcggtcgcggccgcggccggaccgagcgcaatggc
cgttcggattccgagcaggattccgatgccgacgaggtgcggacctcggaggagtccgag
gcgcatcccgaggagaccgcctccgataccctgccggtcggccccgaggagccgttcaac
gatgccgatgtgagcaccgtctcgctcgccgccgagaacggcgccgcggccgagccgccg
ccggtcgtccccgcgccggagctcgagccgatccaagtcgagtccttcgccgaggccgcg
accgaagcggcagcgcccagcccggccaacgccgagcccgcgccggagcccgtcgcggtg
gtgctgacgccgccggacccgaaccgtcccaagcgggccggctggtggtcgcgcaccaag
gcggcgctgtcgggagagtga
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