Methylorubrum sp. GM97: MSPGM_40150
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Entry
MSPGM_40150 CDS
T10720
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
metq Methylorubrum sp. GM97
Pathway
metq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
metq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSPGM_40150 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metq03021
]
MSPGM_40150 (rpoC)
03400 DNA repair and recombination proteins [BR:
metq03400
]
MSPGM_40150 (rpoC)
Enzymes [BR:
metq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSPGM_40150 (rpoC)
Transcription machinery [BR:
metq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSPGM_40150 (rpoC)
DNA repair and recombination proteins [BR:
metq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSPGM_40150 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BDL41425
LinkDB
All DBs
Position
4330022..4334239
Genome browser
AA seq
1405 aa
AA seq
DB search
MNQEVMNLFNQQAQPQSFDQIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMALKDLERILYFESYVVIEPGLTPLKERQLLSEEEYLRAQEEYGEDSFTA
MIGAEAIRRILMELDLEGIATSLKEEIATTTSELKPKKLMKRLKIIEAFQLSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIVADGSVGEHKADDKNNPMQGVFG
DIGQLEHALAAKSVSLHSKIKWRWRGLGPDGEPVSRIYDTTPGRVILSGVLPMHPKVPFD
VVNKLMTKKEISAMIDTVYRHCGQKESVIFCDRIMALGFSHAFKAGISFGKDDMVVPENK
WSIVEDTRTLVKDYEQQYNDGLITQGEKYNKVVDAWAKCSDKLAAEMMGRISAVQKDENG
ADKQVNSIYMMSHSGARGSPAQMKQLAAMRGLMAKPSGEIIETPIISNFKEGLDVLEYFN
STHGARKGLADTALKTANSGYLTRRLVDVAQDAVIREVDCGTTNGIKMRAIIDAGQVVAP
LSIRILGRATAEDLVAQDGTVIVKTNETIEERHLPAINAAGIQEVKIRSVLVCQTKSGVC
ATCYGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADSSFVESSFEG
TIKIRNRSLAKNSDGDLIATGRSVAVVIVGPDGTERAVHRLQYGARVRVDEGDTIKRGQR
IAEWDPYTRPIVAEVDGIVGYEDLYDGQSITETTDESTGIAKRVVIDWRGSSRTSDLKPA
MLVLDQDGKPVKLARGSDARYYLPVDAIIGLDPGAKVRAGDVLARVSTDSAKTRDITGGL
PRVAELFEARRPKDAAIIAEKSGSIAFGRDYKNKRRLTLTPHDGSDAVEYLIPKGKHIHL
QDGDVVELGDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVSINDKHIEVIVR
QMLQKVEITDGGDSDILTGDQIDRTELADFNEKLLAEGKKPIQGVPVLLGITKASLQTKS
FISAASFQETTRVLTEAAVNGKVDTLDGLKENVIVGSLIPAGTGSLAADIRSIARRRDNL
ILQQRSAENAANAAELSELPPAAAE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaatcagcaggcccagccgcagagcttcgaccag
atcaagatctcgatctcgtcgcccgagaaaattctgtcttggtcctacggcgagatcaag
aagcccgagacgatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgtgcg
cgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaggtcaccctcgcgcgcgtccgtcgc
gaccgcatgggccatatcgaactggccgcccccgtcgcacatatctggttcctgaagtcg
ctgccgagccgcatcggcctgctgctcgacatggcgctcaaggaccttgagcggatcctg
tacttcgagtcctacgtcgtcatcgagccgggcctcacccccctgaaggagcgtcagctc
ctctcggaggaagagtacctgcgcgcgcaggaggagtacggcgaggattcgttcacggcg
atgatcggcgccgaggcgatccggcgcatcctgatggaactcgacctcgagggcatcgcg
acgtcgctcaaggaggagatcgcgacgacgacctccgagctgaagcccaagaagctgatg
aagcgcctcaagatcattgaggcgttccagctctcgggcaacaagcccgagtggatgatc
ctgacggtcgtgcccgtcatcccgccggacctgcgcccgctggtcccgctggacggcggc
cgcttcgccacgtccgacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctcaagcggctgatcgaactgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcactgttcgacaacggccgccgcggccgcgtcatcacgggt
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgattactccggccgttcggtcatcgtggtcggt
cccgagctgaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaag
ccgttcatctacgcgcgcctcgacgccaagggtttctccgccaccgtcaagcaggcgaag
aagctcgtcgagaaggagaagcccgaggtttgggatatcctggatgaggtcatccgcgag
catcccgtcatgctcaaccgcgcgccgacgctgcaccgcctcggcatccaggcgttcgag
ccgaagctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttcccctgagcctcgaggctcagttg
gaggcgcgcgtcctgatgatgtcgaccaacaacatcctgcacccggccaatggtcagccg
atcatcgtgccgtcgcaggacatcgtgctgggcctctactacctctcgatcgtcgccgac
ggctcggtcggtgagcacaaggccgacgacaagaacaacccgatgcagggtgtgttcggc
gatatcggtcagctcgagcacgcgctcgcagccaagtccgtctcgctgcactcgaagatc
aagtggcgctggcgcggcctcggtcccgatggcgagcccgtctcccggatctacgacacc
acgccgggccgcgtgatcctgtccggtgtgctgccgatgcacccgaaggtgcccttcgac
gtcgtcaacaagctgatgacgaagaaggagatctcggcgatgatcgacaccgtctaccgc
cactgcggtcagaaggagtcggtgatcttctgcgaccgcatcatggcgctcggcttcagc
cacgcgttcaaggccggcatctcgttcggcaaggacgacatggtcgtgccggagaacaag
tggtcgatcgtcgaggatacccgcacgctcgtgaaggattacgagcagcagtacaacgac
ggcctgatcacccagggcgagaagtacaacaaggtcgtcgatgcctgggccaagtgctcg
gacaagctcgctgccgagatgatgggccggatctccgccgtccagaaggacgagaacggg
gccgacaagcaggtcaactcgatctacatgatgagccactcgggcgcccgtggttcgccc
gcgcagatgaagcagctcgcggcgatgcgcggcctcatggccaagccgtcgggtgagatc
atcgagacgccgatcatctcgaacttcaaggaaggcctcgacgttctcgagtacttcaac
tccacccacggcgcccgtaagggtctcgcggacacggcgttgaagaccgcgaactcgggc
tacctgacgcgtcgtctggtcgacgtggcgcaggacgcggtcatccgcgaggtcgattgc
ggcacgaccaacggcatcaagatgcgcgccatcatcgatgccggccaggtcgtcgccccg
ctctccatccgtatcctgggccgcgccacggccgaggatctggtggcgcaggacggcacc
gtcatcgtcaagacgaacgagacgatcgaggagcgtcacctgccggcgatcaacgccgcc
ggcatccaagaggtgaagatccgctcggtgctggtgtgccagaccaagagcggcgtctgc
gccacctgctacgggcgcgatctggcccgcggcacgcccgtcaacatgggcgaggccgtc
ggcgtcatcgcggcgcagtcgatcggcgagccgggcacccagctcaccatgcgcaccttc
cacatcggcggtgcggcgcagatcgcggattcgtccttcgtcgagtcgagcttcgagggc
acgatcaagatccgcaaccgctcgctcgccaagaactcggacggcgacctcatcgccacc
ggccgttcggtcgcggtggtgatcgtcgggccggacggcaccgagcgggcggttcaccgc
ctgcaatacggtgcccgcgtgcgcgtggacgaaggcgacacgatcaagcgcggccagcgg
atcgcggagtgggacccctacacccgtccgatcgtcgccgaggtggacggcatcgtcggc
tacgaggatctctatgatggtcagtccatcaccgagaccaccgacgagtcgaccggcatc
gccaagcgcgtcgtcatcgactggcgcggttcgtcccgcacctccgacctgaagccggcc
atgctcgtgctggatcaggacggcaagccggtgaagctggcccgcggttcggacgcccgc
tactacctgccggtcgatgccatcatcggtctcgatccgggtgcgaaggtgcgggccggc
gacgtgctcgcccgtgtctcgacggactcggccaagacccgcgacatcaccggcggtctg
ccgcgggtggcggagctgttcgaggcgcgtcgtccgaaggatgcggcgatcatcgccgag
aagtcgggctcgatcgccttcggccgcgactacaagaacaagcgtcgtctgacgctgacg
ccgcacgacggctccgatgccgtcgagtacctgatcccgaagggcaagcacatccacttg
caggacggggacgtggtggaactcggcgactacatcgtcgacggcaacccggcgccgcac
gacatcctggcgatcaagggcgtggaggagcttgctgcctacctcgtcaacgagatccag
gaggtctaccggctccagggcgtgtcgatcaacgacaagcacatcgaggtcatcgtccgg
cagatgctgcagaaggtggaaatcaccgacggcggcgactccgacatcctcacgggcgat
cagatcgaccgcaccgaactggccgacttcaacgagaagctcctcgccgagggcaagaag
ccgatccagggcgtgcccgtcctgctcggcatcaccaaggcgtcgctgcagacgaagtcg
ttcatctcagcggcctcgttccaggagaccacccgcgtcctcacggaggcggcggtcaac
ggcaaggtcgataccttggacggcctgaaggagaacgtcatcgtcggctcgctcatcccg
gccggcaccggctcgctcgcggcggacatccgctccatcgcgcgccgccgtgacaacctg
atccttcagcagcgctccgccgagaacgcggccaacgccgctgaactcagcgagctgccc
ccggcggcggccgagtaa
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